View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10267_low_16 (Length: 248)

Name: NF10267_low_16
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10267_low_16
NF10267_low_16
[»] scaffold0250 (2 HSPs)
scaffold0250 (12-91)||(15780-15859)
scaffold0250 (184-233)||(15963-16013)
[»] chr6 (2 HSPs)
chr6 (12-93)||(17115787-17115868)
chr6 (12-86)||(17125224-17125298)
[»] chr4 (3 HSPs)
chr4 (13-82)||(25064463-25064532)
chr4 (13-82)||(25239373-25239442)
chr4 (13-77)||(25113191-25113255)
[»] scaffold0011 (2 HSPs)
scaffold0011 (13-82)||(222398-222467)
scaffold0011 (13-77)||(184509-184573)
[»] scaffold0246 (1 HSPs)
scaffold0246 (13-77)||(5116-5180)


Alignment Details
Target: scaffold0250 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 15780 - 15859
Alignment:
Q  12 agaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaataagtattttc 91  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15780 agaagagagaaactcacacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaataagtattttc 15859  T

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Target: scaffold0250; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 15963 - 16013
Alignment:
Q  184 attttctatcatttatataattatttgaaagg-aaaaatctagtatatttt 233  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  15963 attttctatcatttatataattatttgaaaggaaaaaaactagtatatttt 16013  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 17115787 - 17115868
Alignment:
Q  12 agaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaataagtattttcct 93  Q
    ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  17115787 agaagagagaaactcacccaaaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaataagtaatttcct 17115868  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 17125224 - 17125298
Alignment:
Q  12 agaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaataagta 86  Q
    ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17125224 agaagagagaaactcacccaaaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaataagta 17125298  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 25064532 - 25064463
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaata 82  Q
    |||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  25064532 gaagagagaaactcactcagaccttcattgctcttgcagctcttgttcctaaccttaagaaggtacaata 25064463  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 25239373 - 25239442
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaata 82  Q
    ||||||| || ||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25239373 gaagagaaaaactcacccagaccttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaata 25239442  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 25113255 - 25113191
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggta 77  Q
    |||||||||| ||||  || | |||||||||||||||||||||||||||||||||||| ||||||    
T  25113255 gaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcctaaccttaagaaggta 25113191  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 222398 - 222467
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtagaata 82  Q
    |||||||||| ||||  || | ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  222398 gaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaata 222467  T

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Target: scaffold0011; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 184509 - 184573
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggta 77  Q
    |||||||||| ||||  || | ||||||||||||||||||||||||||| |||||||||||||||    
T  184509 gaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggta 184573  T

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Target: scaffold0246 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 5180 - 5116
Alignment:
Q  13 gaagagagaacctcagacagaacttcattgctcttgcagctcttgttcctaaccttaaaaaggta 77  Q
    |||||||||| || || || | ||||||||||||||||||||||||||||||| | |||||||||    
T  5180 gaagagagaaacttagccaaagcttcattgctcttgcagctcttgttcctaacttgaaaaaggta 5116  T

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