View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10267_low_17 (Length: 245)

Name: NF10267_low_17
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10267_low_17
NF10267_low_17
[»] chr3 (11 HSPs)
chr3 (2-236)||(45676598-45676832)
chr3 (6-56)||(39583220-39583270)
chr3 (6-55)||(26772824-26772873)
chr3 (4-76)||(37132970-37133042)
chr3 (6-56)||(44198833-44198883)
chr3 (6-55)||(52741504-52741553)
chr3 (6-56)||(46940761-46940811)
chr3 (6-55)||(37992398-37992447)
chr3 (4-49)||(49018027-49018072)
chr3 (6-63)||(53785775-53785832)
chr3 (10-54)||(44429689-44429733)
[»] chr8 (8 HSPs)
chr8 (6-104)||(38815360-38815458)
chr8 (6-56)||(500293-500343)
chr8 (6-56)||(39434733-39434783)
chr8 (6-56)||(6592641-6592691)
chr8 (10-56)||(8882397-8882443)
chr8 (4-52)||(35739981-35740029)
chr8 (6-54)||(3188035-3188083)
chr8 (6-54)||(24125094-24125142)
[»] chr4 (8 HSPs)
chr4 (6-56)||(53619652-53619702)
chr4 (6-200)||(50000772-50000966)
chr4 (6-55)||(600684-600733)
chr4 (6-56)||(23255770-23255820)
chr4 (6-56)||(132451-132501)
chr4 (6-56)||(30940730-30940780)
chr4 (7-48)||(34536931-34536972)
chr4 (4-56)||(31847151-31847203)
[»] chr7 (12 HSPs)
chr7 (6-63)||(21326822-21326879)
chr7 (6-56)||(983015-983065)
chr7 (6-56)||(4501324-4501374)
chr7 (6-56)||(19277359-19277409)
chr7 (4-56)||(22198050-22198102)
chr7 (4-56)||(22239719-22239771)
chr7 (4-56)||(28517278-28517330)
chr7 (1-81)||(34067828-34067908)
chr7 (6-49)||(27521537-27521580)
chr7 (6-56)||(10905183-10905233)
chr7 (6-36)||(24527655-24527685)
chr7 (10-54)||(32584671-32584715)
[»] chr6 (10 HSPs)
chr6 (6-54)||(45670-45718)
chr6 (6-200)||(357564-357758)
chr6 (5-55)||(959645-959695)
chr6 (6-156)||(33220602-33220752)
chr6 (6-56)||(34304562-34304612)
chr6 (6-56)||(4206587-4206637)
chr6 (6-56)||(17249296-17249346)
chr6 (6-55)||(29338071-29338120)
chr6 (6-50)||(4165919-4165963)
chr6 (4-56)||(34554268-34554320)
[»] chr5 (14 HSPs)
chr5 (4-56)||(15292017-15292069)
chr5 (8-56)||(32230498-32230546)
chr5 (4-56)||(37873629-37873681)
chr5 (4-56)||(43129598-43129650)
chr5 (6-56)||(14423744-14423794)
chr5 (6-56)||(13166901-13166951)
chr5 (6-56)||(33692046-33692096)
chr5 (6-56)||(35310514-35310564)
chr5 (7-56)||(27336760-27336809)
chr5 (4-56)||(8858980-8859032)
chr5 (4-54)||(25663025-25663075)
chr5 (6-56)||(26212574-26212624)
chr5 (4-54)||(38875702-38875752)
chr5 (6-63)||(34335403-34335460)
[»] chr1 (10 HSPs)
chr1 (6-56)||(19035513-19035563)
chr1 (6-56)||(31737314-31737364)
chr1 (6-55)||(22346961-22347010)
chr1 (4-56)||(21473067-21473119)
chr1 (4-56)||(25375824-25375876)
chr1 (4-63)||(20259781-20259840)
chr1 (4-54)||(15584938-15584988)
chr1 (6-56)||(50161408-50161458)
chr1 (6-55)||(29169785-29169834)
chr1 (8-56)||(28041118-28041166)
[»] chr2 (12 HSPs)
chr2 (6-55)||(4413058-4413107)
chr2 (4-56)||(2888580-2888632)
chr2 (6-56)||(5532485-5532535)
chr2 (6-56)||(9685406-9685456)
chr2 (6-56)||(28225066-28225116)
chr2 (6-78)||(41867877-41867949)
chr2 (6-56)||(27502428-27502478)
chr2 (138-203)||(10579623-10579688)
chr2 (6-63)||(23484922-23484979)
chr2 (10-55)||(44686490-44686535)
chr2 (7-55)||(16351833-16351881)
chr2 (4-56)||(19161774-19161826)
[»] scaffold0490 (1 HSPs)
scaffold0490 (6-56)||(6400-6450)
[»] scaffold0148 (1 HSPs)
scaffold0148 (4-54)||(33314-33364)
[»] scaffold0493 (1 HSPs)
scaffold0493 (4-36)||(8527-8559)
[»] scaffold0119 (1 HSPs)
scaffold0119 (4-56)||(16198-16250)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 45676832 - 45676598
Alignment:
Q  2 agaacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccaccatacaagcctcgatcccca 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  45676832 agaacatgttgattgtcagaacacgttttcttatgcttggtcactttgcttgacgtggccttgaatgctgtatgtcccaccatacaagcctcgatcccca 45676733  T
Q  102 atctcgcaagttgtaaaactccggttaaatttacatatgcatgttttcccccaaccaactcgtataccttaacatctacttgcctaagtgtcgatcttcc 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45676732 atctcacaagttgtaaaactccggttaaatttacatatgcatgttttcccccaaccaacttgtataccttaacatctacttgcctaagtgtcgatcttcc 45676633  T
Q  202 attaagtgagtaacacaagaagttcatagctgtct 236  Q
    || |||||||||||||||||||||||||| |||||    
T  45676632 atcaagtgagtaacacaagaagttcataggtgtct 45676598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 39583270 - 39583220
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  39583270 catgttgattgtcagaacacgctttctcatgtttggccactttgcttgacg 39583220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 26772824 - 26772873
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  26772824 catgttgattgtcagaacacgttttctgatgtttggccactttgcttgac 26772873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37133042 - 37132970
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgt 76  Q
    ||||||||||||||||||||||| ||||||||| ||   ||||||||||||||| ||||| |  |||||||||    
T  37133042 aacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacgtagcttttagggctgtctgt 37132970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 44198833 - 44198883
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||| |||||||||| ||||||||| |||| ||||||||||||||    
T  44198833 catgttgattctcagaacacgctttctcatgtttggccactttgcttgacg 44198883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 52741553 - 52741504
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||| |||||    
T  52741553 catgttgattgtcagaacacgctttctcatgtttggtcaatttgtttgac 52741504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 46940811 - 46940761
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  46940811 catgttgattgtcggaacatgttttctaatgtttggccactttgcttgacg 46940761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 37992398 - 37992447
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||||| | || |||||| |||||||||||| |||||    
T  37992398 catgttgattgtcagaacatgcttcctcatgtttggtcactttgtttgac 37992447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 49018027 - 49018072
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttg 49  Q
    |||||||||||||| |||||||  ||||||||| ||||||||||||    
T  49018027 aacatgttgattgttagaacacactttctcatgtttggtcactttg 49018072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 53785775 - 53785832
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggcttt 63  Q
    ||||||||||||||||||||| |||||| || |||| ||| || ||||||| ||||||    
T  53785775 catgttgattgtcagaacacgctttctcgtgtttggccaccttacttgacgcggcttt 53785832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 44429689 - 44429733
Alignment:
Q  10 ttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  44429689 ttgattgtcggaacatgttttttcatgcttggtcattttgcttga 44429733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 38815360 - 38815458
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccaccatacaagcctcgatccccaatc 104  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||| ||| ||||||||| |  ||||||||||| |||||| ||||| ||| ||| ||||    
T  38815360 catgttgattgtcagaacacgctttctcatgtttggccactttgtttggcgtggcttttagggctgtctgtcctaccataaaagccccgacccctaatc 38815458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 500293 - 500343
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  500293 catgttgattgtcagaacacgttttctcatgtttggccactttgcttgacg 500343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 39434733 - 39434783
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  39434733 catgttgattgtcagaacacgctttctcatgtttggccactttgcttgacg 39434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 6592641 - 6592691
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  6592641 catgttgattgtgagaacacgctttctcatgtttggccactttgcttgacg 6592691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 8882397 - 8882443
Alignment:
Q  10 ttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  8882397 ttgattgtcagaacacgctttctcatgtttggccactttgcttgacg 8882443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 35740029 - 35739981
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgctt 52  Q
    |||||||||||||||||||| || ||||||||| |||| ||||||||||    
T  35740029 aacatgttgattgtcagaacccgctttctcatgtttggccactttgctt 35739981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 3188035 - 3188083
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||||| || |||||| || | ||||||||||||    
T  3188035 catgttgattgtcagaacacgcttcctcatgttttgccactttgcttga 3188083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 24125094 - 24125142
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    |||||||||||||||| |||| ||||||||| |||| || |||||||||    
T  24125094 catgttgattgtcagagcacgctttctcatgtttggccattttgcttga 24125142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 53619652 - 53619702
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  53619652 catgttgattgtcagaacacgttttctcatgtttggccactttgcttgacg 53619702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 50000966 - 50000772
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccaccatacaagcctcgatccccaatct 105  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||||||  ||||| |  ||||||||||| ||| || ||||| | | |||  | |     
T  50000966 catgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccaccccttaacc 50000867  T
Q  106 cgcaagttgtaaaactccggttaaatttacatatgcatgttttcccccaaccaactcgtataccttaacatctacttgcctaagtgtcgatcttc 200  Q
    | ||||| || |||| || || || |  ||| ||||||||||||| |||||| |  |||| ||| |||||||  |  ||||||||||||||||||    
T  50000866 cacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttc 50000772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 600733 - 600684
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  600733 catgttaattgttagaacacgttttctcatgtttggtcactttgcttgac 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 23255770 - 23255820
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||| |||||||||||||| ||||||||| |||| ||||||||||||||    
T  23255770 catgttaattgtcagaacacgctttctcatgtttggccactttgcttgacg 23255820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 132451 - 132501
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| || | || |||||||||||    
T  132451 catgttgattgtcagaacacgatttctcatgttttgccattttgcttgacg 132501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 30940780 - 30940730
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||  |||||| |||||||    
T  30940780 catgttgattgtcagaacacgctttctcatgtttgaccactttacttgacg 30940730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 34536972 - 34536931
Alignment:
Q  7 atgttgattgtcagaacacgttttctcatgcttggtcacttt 48  Q
    ||||||||||||| |||||||||| ||||| |||||||||||    
T  34536972 atgttgattgtcataacacgttttttcatgtttggtcacttt 34536931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 31847151 - 31847203
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||| |||||||||| | ||||||||| |||  ||||||||||||||    
T  31847151 aacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacg 31847203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 21326879 - 21326822
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggcttt 63  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  21326879 catgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggcttt 21326822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 983015 - 983065
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  983015 catgttgattgtcagaacacgatttctcatgtttggccactttgcttgacg 983065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 4501324 - 4501374
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||| ||||||    
T  4501324 catgttgattgtcagaacacgctttctcatgtttggccactttgtttgacg 4501374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 19277359 - 19277409
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  19277359 catgttgattgtcagaacacgctttctcatgtttggctactttgcttgacg 19277409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 22198050 - 22198102
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||  ||||||  ||||||||| |||||||||||||||||||    
T  22198050 aacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacg 22198102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 22239771 - 22239719
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||  ||||||  ||||||||| |||||||||||||||||||    
T  22239771 aacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacg 22239719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 28517330 - 28517278
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||||||  |||||| ||||||||| |||| ||||||||||||||    
T  28517330 aacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacg 28517278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34067908 - 34067828
Alignment:
Q  1 tagaacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccac 81  Q
    ||||| ||||||||||||| |||||  ||||||||| |||||||||| |||||| | | ||| ||  ||||||||||||||    
T  34067908 tagaaaatgttgattgtcaaaacacactttctcatgtttggtcacttggcttgaagcgacttcgagggctgtctgtcccac 34067828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 27521537 - 27521580
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttg 49  Q
    ||||||||||||||||||||||||||||||| |||  |||||||    
T  27521537 catgttgattgtcagaacacgttttctcatgtttgaccactttg 27521580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 10905183 - 10905233
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||| ||||||||||| |||||||||  |||| ||||||||||||||    
T  10905183 catgttgagtgtcagaacactttttctcatatttggccactttgcttgacg 10905233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 24527655 - 24527685
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatg 36  Q
    |||||||||||||||||||||||||||||||    
T  24527655 catgttgattgtcagaacacgttttctcatg 24527685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 32584671 - 32584715
Alignment:
Q  10 ttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||||||||||| |||  ||||||| ||||    
T  32584671 ttgattgtcagaacacgttttctcatgtttgaccactttgtttga 32584715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 45718 - 45670
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  45718 catgttgattgtcagaacacgttttctcatgtttgatcactttgcttga 45670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 357758 - 357564
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccaccatacaagcctcgatccccaatct 105  Q
    |||||| |||||||||||||| ||||||||| |||| ||||||||||||||  ||||| |  |||| |||||| ||| || ||||  ||| ||| || |     
T  357758 catgttcattgtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccgacccctaaacc 357659  T
Q  106 cgcaagttgtaaaactccggttaaatttacatatgcatgttttcccccaaccaactcgtataccttaacatctacttgcctaagtgtcgatcttc 200  Q
    | ||||| || ||||||| || || |  ||| ||||||||||| | |||||| |  | || ||| |||||||| | | |||||||||||||||||    
T  357658 cacaagtggtgaaactccagtcaagtccacacatgcatgttttgctccaacccatccatacaccataacatctgcatacctaagtgtcgatcttc 357564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 959645 - 959695
Alignment:
Q  5 acatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||    
T  959645 acatgttgattgtcagaacacgttttctcatggttagccactttgcttgac 959695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 33220752 - 33220602
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcccaccatacaagcctcgatccccaatct 105  Q
    ||||||||||||||  ||||| ||||||||| |||| |||||||||||| |  ||||| |  ||||||||||| ||| || ||||| ||| ||| || |     
T  33220752 catgttgattgtcaacacacgctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctaccgtaaaagccccgacccctaaacc 33220653  T
Q  106 cgcaagttgtaaaactccggttaaatttacatatgcatgttttcccccaac 156  Q
    | ||||| || |||| || || ||||| ||| ||||||||||||| |||||    
T  33220652 cacaagtggtgaaaccccagtcaaattcacacatgcatgttttcctccaac 33220602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 34304562 - 34304612
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| ||||| | |||||||||||    
T  34304562 catgttgattgtcagaacacgctttctcatgtttggttattttgcttgacg 34304612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4206637 - 4206587
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||| |||||||||||||| ||||||||| || | ||||||||||||||    
T  4206637 catgttcattgtcagaacacgctttctcatgtttagccactttgcttgacg 4206587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 17249346 - 17249296
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||  ||||||||| |||| ||||||| ||||||    
T  17249346 catgttgattgtcagaacacactttctcatgtttggccactttgtttgacg 17249296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 29338120 - 29338071
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    |||||||||||| |||||||||||||||||| ||||   |||||||||||    
T  29338120 catgttgattgttagaacacgttttctcatgtttggcagctttgcttgac 29338071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 4165963 - 4165919
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgc 50  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||    
T  4165963 catgttgattgtcagaacacgctttctcatgtttagccactttgc 4165919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 34554320 - 34554268
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||| |||||| |||||||||| ||||||||| ||||||  |||||||||||    
T  34554320 aacatcttgattatcagaacacgctttctcatgtttggtcgttttgcttgacg 34554268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 15292069 - 15292017
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  15292069 aacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacg 15292017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 32230546 - 32230498
Alignment:
Q  8 tgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  32230546 tgttgattgtcagaacacattttctcatgtttggtcactttgcttgacg 32230498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 37873681 - 37873629
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  37873681 aacatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacg 37873629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 43129598 - 43129650
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  43129598 aacatgttgattgtcagaacacgttttctcatgtttgaccactttgcttgacg 43129650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 14423744 - 14423794
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  14423744 catgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacg 14423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 13166951 - 13166901
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| || | ||||||||||||||    
T  13166951 catgttgattgtcagaacacgctttctcatgtttagccactttgcttgacg 13166901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 33692096 - 33692046
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  33692096 catgttgattgtcataacacgttttgtcatgtttggccactttgcttgacg 33692046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 35310514 - 35310564
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||| | ||||||||| |||| ||||||||||||||    
T  35310514 catgttgattgtcagaacatgctttctcatgtttggccactttgcttgacg 35310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 27336760 - 27336809
Alignment:
Q  7 atgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||||||||||| ||||||||| |||  ||||||||||||||    
T  27336760 atgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacg 27336809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 8858980 - 8859032
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||| ||||||||| |||   |||||||||||||    
T  8858980 aacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacg 8859032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 25663075 - 25663025
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    |||||||||||| |||||||||| ||||||||| |||| ||||||| ||||    
T  25663075 aacatgttgattatcagaacacgctttctcatgtttggccactttgtttga 25663025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 26212624 - 26212574
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||| ||||||| ||| ||||||||| |||| ||||||||||||||    
T  26212624 catgttgatcgtcagaatacgctttctcatgtttggccactttgcttgacg 26212574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 38875702 - 38875752
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||||||  ||||||||| |||||| ||||| ||||    
T  38875702 aacatgttgattgtcagaacacactttctcatgtttggtcgctttgtttga 38875752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 34335403 - 34335460
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggcttt 63  Q
    ||||||||||||||| ||||| ||||||||| |||| |  |||||||||| |||||||    
T  34335403 catgttgattgtcaggacacgctttctcatgtttggcccttttgcttgacatggcttt 34335460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 19035513 - 19035563
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  19035513 catgttgattgtcagaacacgctttctcatgtttggccactttgcttgacg 19035563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 31737364 - 31737314
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||| | ||||||||||| |||| ||||||||||||||    
T  31737364 catgttgattgtcagaatatgttttctcatgtttggccactttgcttgacg 31737314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 22346961 - 22347010
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||    
T  22346961 catgttgattgtcagaacacgctttctcatatttggccactttgcttgac 22347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 21473067 - 21473119
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||| ||||||||| |||| || ||| |||||||    
T  21473067 aacatgttgattgtcagaacacgctttctcatgtttggccattttacttgacg 21473119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 25375876 - 25375824
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||| || |||||| ||||| ||||| |||||||||||||||||||    
T  25375876 aacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacg 25375824  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 20259840 - 20259781
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggcttt 63  Q
    ||||||||||||||||||||||| ||||||||  ||   ||||||||||||||| |||||    
T  20259840 aacatgttgattgtcagaacacgctttctcatttttaaccactttgcttgacgtagcttt 20259781  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 15584938 - 15584988
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||| ||||||||  ||| ||| |||||||||||||    
T  15584938 aacatgttgattgtcagaatacgttttccaatgtttgatcactttgcttga 15584988  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 50161458 - 50161408
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||| |||||||| ||||||||| |||  ||||||||||||||    
T  50161458 catgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacg 50161408  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 29169834 - 29169785
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    |||||||||||||||||||||||||||| || |||| ||| || ||||||    
T  29169834 catgttgattgtcagaacacgttttctcgtgtttggccaccttacttgac 29169785  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 28041166 - 28041118
Alignment:
Q  8 tgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||  ||||||||| |||| ||||||| ||||||    
T  28041166 tgttgattgtcagaacacactttctcatgtttggccactttgtttgacg 28041118  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 4413107 - 4413058
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  4413107 catgttgattgtcagaacacgctttctcatgtttggccactttgcttgac 4413058  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 2888580 - 2888632
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||| ||||    
T  2888580 aacatgttgattgtcagaacacgttttctcatgtttgtccactttgctagacg 2888632  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 5532485 - 5532535
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||||||||| |||||||||||||||| |||  ||||||||||||||    
T  5532485 catgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacg 5532535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 9685456 - 9685406
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||||||    
T  9685456 catgttgattgtcagaacacgctttttcatgtttggccactttgcttgacg 9685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 28225066 - 28225116
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||||||    
T  28225066 catgttgattgtcagaatacgctttctcatatttggtcactttgcttgacg 28225116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 41867949 - 41867877
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggctttgaatgctgtctgtcc 78  Q
    ||||||||||||||||||| | ||||||||| |||  ||||||||||||||  ||||| || |||| ||||||    
T  41867949 catgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagcttttaaggctgcctgtcc 41867877  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 27502428 - 27502478
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||| ||||| ||||||||||||||||| |||  ||||||||||||||    
T  27502428 catgttgtttgtcggaacacgttttctcatgtttgaccactttgcttgacg 27502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 10579688 - 10579623
Alignment:
Q  138 atgcatgttttcccccaaccaactcgtataccttaacatctacttgcctaagtgtcgatcttccat 203  Q
    ||||||||||||| || ||| ||||||| ||| |||||| |  | |||||||||||||||||||||    
T  10579688 atgcatgttttcctcctacccactcgtacaccataacatttgttggcctaagtgtcgatcttccat 10579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 23484979 - 23484922
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacgtggcttt 63  Q
    ||||||||||||||||||| | ||||||||  |||| ||||||| ||||||| |||||    
T  23484979 catgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttt 23484922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 44686490 - 44686535
Alignment:
Q  10 ttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||||||||| ||||||||| |||| ||| |||||||||    
T  44686490 ttgattgtcagaacacgctttctcatgtttggccacattgcttgac 44686535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 16351881 - 16351833
Alignment:
Q  7 atgttgattgtcagaacacgttttctcatgcttggtcactttgcttgac 55  Q
    ||||||||||| ||||||| |||||||||| |||  |||||||||||||    
T  16351881 atgttgattgtgagaacacattttctcatgtttgaccactttgcttgac 16351833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 19161826 - 19161774
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||||| ||| ||||| |||  |||||| |||||||    
T  19161826 aacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacg 19161774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 6400 - 6450
Alignment:
Q  6 catgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||||    
T  6400 catgttgattgtcagaacacgctttctcatgtttggccactttacttgacg 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 33314 - 33364
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttga 54  Q
    ||||||||||||||||||||||| ||||||||| || | ||||||||||||    
T  33314 aacatgttgattgtcagaacacgctttctcatgtttagccactttgcttga 33364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 8559 - 8527
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  8559 aacatgttgattgtcagaacatgttttctcatg 8527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 16198 - 16250
Alignment:
Q  4 aacatgttgattgtcagaacacgttttctcatgcttggtcactttgcttgacg 56  Q
    |||||||| |||||||||||| ||||||||||| |||| || |||| ||||||    
T  16198 aacatgtttattgtcagaacatgttttctcatgtttggccattttgtttgacg 16250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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