View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_low_19 (Length: 223)
Name: NF10267_low_19
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8683888 - 8683666
Alignment:
| Q |
1 |
acaattaatgcaggaagtccaatttcaacacatttcgcaagctgcaaaattaattttcaaatcataaatagagaagttaagaagcaaaaaatcaaaaggg |
100 |
Q |
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| T |
8683888 |
acaattaatgcaggaagtccaatttcaacacatttcgcaagctgcaaaattaattttcaaatcataaatagagaagttaagaagcaaaaaatcaaaaggg |
8683789 |
T |
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| Q |
101 |
ttgtattctttaatcctcaattcttcaccattggaaaaccaagttgatagagaccaagtccagcgaatgttacatatggaactacagaaagtggactaag |
200 |
Q |
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| T |
8683788 |
ttgtattctttaatcctcaattcttcaccattggaaaaccaagttgatagagaccaagtccagcgaatgttacatatggaactacagaaagtggactaag |
8683689 |
T |
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| Q |
201 |
gaacctgtgaatgaatcaatgaa |
223 |
Q |
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| T |
8683688 |
gaacctgtgaatgaatcaatgaa |
8683666 |
T |
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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 47579970 - 47579890
Alignment:
| Q |
127 |
accattggaaaaccaagttgatagagaccaagtccagcgaatgttacatatggaactacagaaagtggactaaggaacctg |
207 |
Q |
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| T |
47579970 |
accataggaaaaccaagatgatagagaccaagtccagtgaatgttacataagggacaacacaaagtgggctaaggaacctg |
47579890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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