View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_low_2 (Length: 484)
Name: NF10267_low_2
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 139 - 468
Target Start/End: Original strand, 45677111 - 45677443
Alignment:
| Q |
139 |
gaatgtaccataatccccagttcattttatatttcttgcaatgacatgttgtacaagaaaaataaattaaccatttggccacatctcgataagacattct |
238 |
Q |
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| T |
45677111 |
gaatgtactataatccccatttcattttatatttcttgcaatgacatgttgtacaaggaaaataaattaaccatttgaccacatctcgataagacattct |
45677210 |
T |
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| Q |
239 |
ctaggnnnnnnn---ctctccatttttcttgtgtctctccctttcgctaaccccatagtggcacttgtttattactcccattctaatcagattttgaatt |
335 |
Q |
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| T |
45677211 |
ctaggttttttttttctttccatttttcttgggtctctccctctcgctaaccccatagtggcacttgtttattactcccattctaatcagattttgaatt |
45677310 |
T |
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| Q |
336 |
attcgatcattgttttgattactacataagtatataagtacaaaatgattattaaactttgagtcattccacacgcaacgcaactggcaatcccttgaag |
435 |
Q |
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| T |
45677311 |
attcgatcattgttttgattactacgtaagtatataagtacaaaatgattattaaactttgagtcattccacacgcaacgcaactggcaatcccttgaag |
45677410 |
T |
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| Q |
436 |
gtatcataaaatatgttagattaaggattctgt |
468 |
Q |
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| T |
45677411 |
gtatcataaaatatgttagattaaggattctgt |
45677443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45676968 - 45677030
Alignment:
| Q |
1 |
tacgatggacttaacgatatattttgttgctcgctttccttcc-actcatgtaatttagagaa |
62 |
Q |
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| T |
45676968 |
tacgatggacttaacggtatatcttgttgctcgctttccttccggctcatgtaatttagagaa |
45677030 |
T |
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