View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_low_3 (Length: 443)
Name: NF10267_low_3
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 8696111 - 8696514
Alignment:
| Q |
28 |
agtcaaatcttggtcgagctacaacagttaaaaacataactttcggaacaaaatttttgcttttacaactacgatgtggtttatcctcgtctggcagcaa |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696111 |
agtcaaatcttggtcgagctacaacagttaaaaacataactttcagaacaaaatttttgcttttacaactacgatgtggtttatcctcgtctggcagcaa |
8696210 |
T |
|
| Q |
128 |
atagtatctctcagatttctttgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtataccttca |
227 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696211 |
atagtatctctcagatttcttcgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtataccttca |
8696310 |
T |
|
| Q |
228 |
agcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgtggctttatggcactcgaatgacgttgtattgcacctgataatataa |
327 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696311 |
agcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgtggctttatggcactcgaatgacgttgtattgcacctgataatataa |
8696410 |
T |
|
| Q |
328 |
tcctatatactgcacttgtatttgtattcatggcaacagctaaagttcgaacagttgttcttttactcaaagggatttcacgaatttgactcacatcaat |
427 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696411 |
gcctatataatgcacttgtatttgtattcatggcaacagctaaagttcgaacagttgttcttttactcaaagggatttcacgaatttgactcacatcaat |
8696510 |
T |
|
| Q |
428 |
ttca |
431 |
Q |
| |
|
|||| |
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|
| T |
8696511 |
ttca |
8696514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 34223897 - 34224252
Alignment:
| Q |
25 |
ccgagtcaaatcttggtcgagctacaacagttaaaaacataactttcggaacaaaatttttgcttttacaactacgatgtggtttatcctcgtctggcag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223897 |
ccgagtcaaatcttggtcgagctacaacagttaaaaacataactttcggaacaaaatttttgcttttacaactacgatgtggtttatcctcgtctggcag |
34223996 |
T |
|
| Q |
125 |
caaatagtatctctcagatttctttgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtatacct |
224 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223997 |
caaatagtatctctcagatttcttcgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtatacct |
34224096 |
T |
|
| Q |
225 |
tcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgtggctttatggcactcgaatgacgttgtattgcacctgataata |
324 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34224097 |
tcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgtggctttatggcactcgaatgacgttgtattgcaccttataata |
34224196 |
T |
|
| Q |
325 |
taatcctatatactgcacttgtatttgtattcatggcaacagctaaagttcgaaca |
380 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
34224197 |
taagcctatatactgcacttgtatttgtattcatggcaacaactaaagttcgaaca |
34224252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 40287412 - 40287479
Alignment:
| Q |
153 |
atatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||| |
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|
| T |
40287412 |
atatagaaccatttttcatcaatgtgaacaacattatacataggcttaaacactggatcatgtggtat |
40287479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 16444047 - 16444111
Alignment:
| Q |
156 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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|
| T |
16444047 |
tagaaccatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
16444111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 7304138 - 7304074
Alignment:
| Q |
156 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
||||| |||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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|
| T |
7304138 |
tagaatcatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
7304074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 6124316 - 6124252
Alignment:
| Q |
156 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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|
| T |
6124316 |
tagaaccatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
6124252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 24742109 - 24742042
Alignment:
| Q |
153 |
atatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||| ||||||| | ||||||||||||| |
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|
| T |
24742109 |
atatagaaccatttttcatcaatgtgaacaacattatacataggcttaaacacttgatcatgtggtat |
24742042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 4202840 - 4202776
Alignment:
| Q |
156 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
|||||||||||||| ||||||| || || |||||||||| ||||||| ||||||||||||||| |
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|
| T |
4202840 |
tagaaccatttttcatcaatgtaaacaacattatacatatgcttaaacactggatcatgtggtat |
4202776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 10368832 - 10368896
Alignment:
| Q |
156 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
220 |
Q |
| |
|
|||||||||||||| || | ||||| || |||||||||| ||||||| ||||||||||||||| |
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|
| T |
10368832 |
tagaaccatttttcatctacgtgaacaacattatacataggcttaaacactggatcatgtggtat |
10368896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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