View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_low_4 (Length: 431)
Name: NF10267_low_4
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 51231856 - 51232254
Alignment:
| Q |
11 |
tgagatgaagtaatattctctgaattaaagagaaataattgcatcttttaggagcgacgaataacattggttaaaaggggnnnnnnnnnnnnnnnctaac |
110 |
Q |
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| T |
51231856 |
tgagatgaagtaatattctctgaatttaagagaaataattgcatcttttaggagcgacgaataacattggttaaaaggggaaaaaatccaaaaacctaac |
51231955 |
T |
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| Q |
111 |
aatcattgttggccctgaatctttagtcttaaaagcaatcacatgccttggttggctatataatatctccactacctatcctagttagctatggtatggt |
210 |
Q |
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| T |
51231956 |
aatcattgttggccctgaatctttagtcttaaaagcaatcacatgccttggttggctatataatatctccactacctatcctagttagctatggtatggt |
51232055 |
T |
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| Q |
211 |
atggagacaatgtaacagactccatatatagatcggttttcagattttagatttactatactgaagtgaggagaaatatatgtacagcaagcaatcaaat |
310 |
Q |
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| T |
51232056 |
atggagacaatgtaacagactccatatatagatcggttattagattttaga-ttactatactgaagtgaggagaa----atgtacagcaagcaatcaaat |
51232150 |
T |
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| Q |
311 |
tattcacagtcaa------------gagatcgatcagaaaaaacatgaacaaataactgccataattttctgttctatcctataatccaccccataaaac |
398 |
Q |
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||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
51232151 |
tattcacagtcaaccaatttatgctgcaagagatcagaaaaaacatgaacaaataactgccataattttctgttctatcctataatccaccctattaaac |
51232250 |
T |
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