View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10267_low_5 (Length: 394)
Name: NF10267_low_5
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 27924159 - 27924264
Alignment:
| Q |
160 |
ttactcagaatcaactgcaaatgatgaaaatatgcaatggaatatttatttaaccaacatgaaaaatactacaacaaag-aaaaaagaaaataactagca |
258 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
27924159 |
ttactcagaattaactgcaaatgatgaaaatatgcgatggaatatttatttaaccaacatgaaagatactacaacaaagaaaaaaagcaaataaccagca |
27924258 |
T |
|
| Q |
259 |
cagaga |
264 |
Q |
| |
|
|||||| |
|
|
| T |
27924259 |
cagaga |
27924264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27923955 - 27924052
Alignment:
| Q |
1 |
aaactgaaggaggagctatcattctattctaaaccaattatattc-taatcctataatgagaaagattatgtgcatatcaaatttaattgaaatggaa |
97 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
27923955 |
aaactgaaggaggcactatcattgtattataaaccaattatattcctaatcccataatgagaaagtttatctgcatatcaaatttaattgaagtggaa |
27924052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28077677 - 28077814
Alignment:
| Q |
1 |
aaactgaaggaggagctatcattctattctaaaccaattatattctaatcctataatgagaaagattatgtgcatatcaaatttaattgaaatggaaaat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| ||| |||| || |||||||||||||| ||||| ||| |||||||||| || ||||| |
|
|
| T |
28077677 |
aaactgaaggaggaactatcattctattctaaactaattatactctgatcccattatgagaaagattatctgcattacaagtttaattgaagtgcaaaat |
28077776 |
T |
|
| Q |
101 |
tgtatatttacatac-cctcaaaaacagcacaaacagt |
137 |
Q |
| |
|
| || | |||||| | ||| |||||||||| ||||||| |
|
|
| T |
28077777 |
tttacacttacatgctcctaaaaaacagcataaacagt |
28077814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 28005159 - 28005246
Alignment:
| Q |
213 |
ccaacatgaaaaatactacaacaaagaaaaaagaaaataactagcacagagaaacaagccataggttaatttgtgtgataagatcact |
300 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
28005159 |
ccaacatgaaagatactacaacaaagaacaaagcaaataactgacacagagaaacaagccataggttaacctgtttgataagatcact |
28005246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28036947 - 28037088
Alignment:
| Q |
1 |
aaactgaaggaggagctatcattctattctaaaccaattata-ttctaatcctataatgagaaagattatgtgcatatcaaatttaattgaaatggaaaa |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| | ||||||| || |||||||| ||||| ||| || ||| |||||||||| || |||| |
|
|
| T |
28036947 |
aaactgaaggaggaactatcattctattctaaaacaattatactcctaatcccattatgagaaatattatctgctta-caagtttaattgaagtgcaaaa |
28037045 |
T |
|
| Q |
100 |
ttgtatatttacatac-cctcaaaaacagcacaaacagttgca |
141 |
Q |
| |
|
|| || | || ||| | |||||||||||||| |||||| |||| |
|
|
| T |
28037046 |
ttttacacttgcatgctcctcaaaaacagcataaacagatgca |
28037088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 28037123 - 28037217
Alignment:
| Q |
141 |
atccaagcaacagaactttttactcagaatcaactgcaaatgatgaaaatatgcaatggaatatttatttaaccaacatgaaaaatactacaacaaaga |
239 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||| || |||||||||||| ||||||||| ||||||| | | ||| |||| |||||||||| |
|
|
| T |
28037123 |
atccaagcaacataactttt--ctcagaatcatctgcaatgga--aaaatatgcaattgaatatttaattaaccagcgttaaagataccacaacaaaga |
28037217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 28048359 - 28048400
Alignment:
| Q |
2 |
aactgaaggaggagctatcattctattctaaaccaattatattc |
45 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28048359 |
aactgaaggaggaacta--attctattctaaaccaattatattc |
28048400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University