View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_low_7 (Length: 358)
Name: NF10267_low_7
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 41957418 - 41957091
Alignment:
| Q |
16 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41957418 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
41957319 |
T |
|
| Q |
116 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcagaatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41957318 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcataatag |
41957219 |
T |
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| Q |
216 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataacttcggattgcg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41957218 |
tgctaagagtagagatgttatggagaggatttgcaaatatcatgaggctgagtctagctcattttctttgtgattgtttctgatataacttcgtattgcg |
41957119 |
T |
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| Q |
316 |
tggtctctctcatccgtgtcgcattact |
343 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
41957118 |
tggtttctctcatccgtgtcgcattact |
41957091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 5598488 - 5598192
Alignment:
| Q |
16 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5598488 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
5598389 |
T |
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| Q |
116 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcagaatag |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5598388 |
gtcggcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcaaaatag |
5598289 |
T |
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| Q |
216 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataacttcggatt |
312 |
Q |
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| T |
5598288 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataactttggatt |
5598192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 25548409 - 25548113
Alignment:
| Q |
16 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548409 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
25548310 |
T |
|
| Q |
116 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcagaatag |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548309 |
gtctgcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcagaatag |
25548210 |
T |
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| Q |
216 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataacttcggatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25548209 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataactttggatt |
25548113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 40636731 - 40636435
Alignment:
| Q |
16 |
cagatttgttataggaatattagtatggagaagtttattgaagtggaagagaagactaggtatgatccacatccggataatccgaatggatggactgttt |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40636731 |
cagatttgttataggaaaattagtatggagaagtttattgaagtggaagaaaagactaggtatgatccacatccggataatccgaatggatggactgttt |
40636632 |
T |
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| Q |
116 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgataggtttcttcagaatag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40636631 |
gtcagcaggagacgaggattcggattaagccgttgtctgctttggcttctatggcggagaaagttgagcagaggtgtgctgatagatttcttcagaatag |
40636532 |
T |
|
| Q |
216 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttgtgattgtttctgatataacttcggatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40636531 |
tgctaagagtagagatgttatggagaggatttgcaaatatcttgaggctgagtctagctcattttctttatgattgtttctgatataacttcggatt |
40636435 |
T |
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