View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10268_high_4 (Length: 291)
Name: NF10268_high_4
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10268_high_4 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 2872 - 3152
Alignment:
| Q |
1 |
cggaaagatcaaatcaacgacgaagaaaaagggagtcgacgatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaag |
100 |
Q |
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| T |
2872 |
cggaaagatcaaatcaacgacgaagaaaaagggagtcaacaatctttgtcaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaag |
2971 |
T |
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| Q |
101 |
gtggaaacttggcccctgccgagacaaatcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgcaaatttctaaccta |
200 |
Q |
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| T |
2972 |
ggggaaacttggcccctgccgagacaactcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgcaaatttctaaccta |
3071 |
T |
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| Q |
201 |
tgatgatgaaaatgattgagatttgatgtggtgatagcaacaaatga-ggttttagtttgtcaggatattaagagtgtgta |
280 |
Q |
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| T |
3072 |
tgatgatgaaaatgattgagatttgatgtggtgatagcagcaaatgatggttttagtttgtcaggatattaagagtgtgta |
3152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 13950732 - 13951012
Alignment:
| Q |
1 |
cggaaagatcaaatcaacgacgaagaaaaagggagtcgacgatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaag |
100 |
Q |
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| T |
13950732 |
cggaaagatcaaatcaacgacgaagaaaaagggagtcaacaatctttgtcaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaag |
13950831 |
T |
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| Q |
101 |
gtggaaacttggcccctgccgagacaaatcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgcaaatttctaaccta |
200 |
Q |
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| T |
13950832 |
ggggaaacttggcccctgccgagacaactcactctctcatacaaattatataagtgttccttctttctcatacaaatgcaaattgcaaatttctaaccta |
13950931 |
T |
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| Q |
201 |
tgatgatgaaaatgattgagatttgatgtggtgatagcaacaaatga-ggttttagtttgtcaggatattaagagtgtgta |
280 |
Q |
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| T |
13950932 |
tgatgatgaaaatgattgagatttgatgtggtgatagcagcaaatgatggttttagtttgtcaggatattaagagtgtgta |
13951012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20901882 - 20902018
Alignment:
| Q |
1 |
cggaaagatcaaatcaacgacgaagaaaaagggagtcgacgatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaag |
100 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20901882 |
cggaaagaccaaatcaacgatgaagaaaaagggagtcgacaatctttttcaagtttctttgacaggaagtcatctttattctcaaagaagcctcccaaac |
20901981 |
T |
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| Q |
101 |
gtggaaacttggcccctgccgagacaaatcactctct |
137 |
Q |
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| T |
20901982 |
gtggaaacttggccgctgctgagacaactcactctct |
20902018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 20902085 - 20902229
Alignment:
| Q |
143 |
aaattatataagtgttccttctttctcatacaaatg-caaattgcaaatttctaacctatgatgatgaaaatgattgagatttgatgtggtgatagcaac |
241 |
Q |
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| T |
20902085 |
aaattatatatatgttcctactttctcatacaaatgtcaaattgcaaaattcttacctgtgatcatgaaaatgattgagattcgatgtggtaatagcagc |
20902184 |
T |
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| Q |
242 |
aaatga-ggttttagtttgtcaggatattaagagtgtgtaatttg |
285 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
20902185 |
aaatgatgattttagtttgtcaggatattaagagtgtgtaatttg |
20902229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 40703705 - 40703763
Alignment:
| Q |
37 |
cgacgatctttgtgaagtttctttgacaggaagtcatctttattctcaaagaagcctcc |
95 |
Q |
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| T |
40703705 |
cgacaatctttctcaagtttctttgaaaacaagtcatctttattttcaaagaagcctcc |
40703763 |
T |
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