View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10268_low_1 (Length: 544)
Name: NF10268_low_1
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10268_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 6185423 - 6185960
Alignment:
| Q |
1 |
tcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctattataa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6185423 |
tcgccttcaaccaccgtttcatctatgtcctgattaggttgaagaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacctattataa |
6185522 |
T |
|
| Q |
101 |
tcagaaataaagtttgccatcattttcgtatagactcgtatgtataaatagaggattttgtagtcaatatcgatcgaaagattaagttactgataaatga |
200 |
Q |
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| T |
6185523 |
tcagagataaagttcggcatcattttcatgtagacttgtatgtataaatagacgattttatattcgatat---tc-aaagatcaagttactcataaatga |
6185618 |
T |
|
| Q |
201 |
gatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgc |
300 |
Q |
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|||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185619 |
gatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgc |
6185718 |
T |
|
| Q |
301 |
cgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185719 |
cgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaa |
6185818 |
T |
|
| Q |
401 |
agcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatca |
500 |
Q |
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| T |
6185819 |
agcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatca |
6185918 |
T |
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| Q |
501 |
tagtatcttgaacacattcttagtaccatctctgctcctcct |
542 |
Q |
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| T |
6185919 |
tagtatcttgaacacattcttagtaccatctcggctgctcct |
6185960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 192 - 542
Target Start/End: Original strand, 4236517 - 4236867
Alignment:
| Q |
192 |
gataaatgagatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggat |
291 |
Q |
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| T |
4236517 |
gataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggat |
4236616 |
T |
|
| Q |
292 |
ccttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgt |
391 |
Q |
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| T |
4236617 |
ccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgt |
4236716 |
T |
|
| Q |
392 |
acacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattcca |
491 |
Q |
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| T |
4236717 |
atacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattcca |
4236816 |
T |
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| Q |
492 |
taaccatcatagtatcttgaacacattcttagtaccatctctgctcctcct |
542 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
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| T |
4236817 |
aaaccatcatggtattttgaacacattcttagtaccatctctgctgctcct |
4236867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4236299 - 4236391
Alignment:
| Q |
1 |
tcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
93 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236299 |
tcgccttcaaccactgtttcatccgtgtcctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
4236391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 446 - 542
Target Start/End: Original strand, 21847622 - 21847718
Alignment:
| Q |
446 |
ttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctctgctcctcct |
542 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgcttctcct |
21847718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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