View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10268_low_11 (Length: 280)

Name: NF10268_low_11
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10268_low_11
NF10268_low_11
[»] chr1 (17 HSPs)
chr1 (4-262)||(13094667-13094926)
chr1 (1-262)||(13130096-13130358)
chr1 (6-262)||(13161789-13162046)
chr1 (122-262)||(13007468-13007608)
chr1 (77-222)||(30367847-30367992)
chr1 (36-260)||(13101270-13101494)
chr1 (122-237)||(13244302-13244417)
chr1 (79-242)||(13069917-13070080)
chr1 (122-237)||(13271882-13271997)
chr1 (36-262)||(19727421-19727647)
chr1 (35-217)||(13214132-13214314)
chr1 (136-260)||(13204729-13204853)
chr1 (125-241)||(19278952-19279068)
chr1 (122-221)||(12963692-12963791)
chr1 (77-222)||(13064952-13065097)
chr1 (117-227)||(13080641-13080751)
chr1 (122-241)||(13086399-13086518)
[»] chr6 (1 HSPs)
chr6 (122-219)||(31396459-31396557)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 13094926 - 13094667
Alignment:
Q  4 atgaagaaatggaccaa-gtattttaggcatggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgc 102  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13094926 atgaagaaatgtaccaatgttttttaggcatggtaaaagccctaaagaatgaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgc 13094827  T
Q  103 acttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcatt 202  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13094826 atttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcatt 13094727  T
Q  203 caagagatcaaagataattggttaacacaagaggataatcggattactttgagggatgtg 262  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13094726 caagagatcagagataattggttaacacgagaggattatcggattactttgagggatgtg 13094667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 13130358 - 13130096
Alignment:
Q  1 gcgatgaagaaatggaccaa-gtattttaggcatggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacac 99  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||| ||    
T  13130358 gcgatgaagaaatggaccaatgttttttaggcatggtaaaagccctaaagaatgaaggatatggaaagggtgaaatcagtgagaagtatcttagagatac 13130259  T
Q  100 tgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatc 199  Q
    |||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130258 tgcatttactatgttttttgccggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatc 13130159  T
Q  200 attcaagagatcaaagataattggttaacacaagaggataatcggattactttgagggatgtg 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13130158 attcaagagatcaaagataattggttaacacaagagggtaatcggattactttgaggcatgtg 13130096  T

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Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 13162046 - 13161789
Alignment:
Q  6 gaagaaatggaccaa-gtattttaggcatggtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcac 104  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||    
T  13162046 gaagaaatggaccaatgttttttaggcatggtaaaagccctaaagaaagaaggatatggaaagggggaaatcagtgagaagtatcttagagatactgcac 13161947  T
Q  105 ttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattca 204  Q
    | |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13161946 tcactatggtgtttgccggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattca 13161847  T
Q  205 agagatcaaagataattggttaacacaagaggataatcggattactttgagggatgtg 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  13161846 agagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtg 13161789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 13007608 - 13007468
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 221  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||| ||||||||||| |    
T  13007608 ggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagataact 13007509  T
Q  222 ggttaacacaagaggataatcggattactttgagggatgtg 262  Q
    ||   ||||||||||| |||| || | ||||||| ||||||    
T  13007508 ggcccacacaagaggagaatcagactcctttgagagatgtg 13007468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 30367847 - 30367992
Alignment:
Q  77 agtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaactt 176  Q
    ||||||||| |||||||||||| ||||||  || |  | || || || ||||| ||| ||||||||  |||||||||||||||||||||| ||||||||     
T  30367847 agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactc 30367946  T
Q  177 atcctattgtggaagaaaaaatcattcaagagatcaaagataattg 222  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||    
T  30367947 atcctattgtggaagccaaaattattcaagagatcaaagataattg 30367992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 13101494 - 13101270
Alignment:
Q  36 taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaat 135  Q
    ||||||| |||| ||| ||||||  ||||||||| |||||   ||||||| |||||||||||| || | | ||| |  | || || ||||||||  || |    
T  13101494 taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt 13101395  T
Q  136 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagag 235  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||  ||||| |||||||| ||||||||||| ||    |||||||||    
T  13101394 tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag 13101295  T
Q  236 gataatcggattactttgagggatg 260  Q
    || |||| |||| ||| ||| ||||    
T  13101294 gagaatcagattccttcgagagatg 13101270  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 13244302 - 13244417
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 221  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||| |||||||| ||||||||| |||||  ||||| ||||||||||||||||||||||    
T  13244302 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataatt 13244401  T
Q  222 ggttaacacaagagga 237  Q
    |  |||||||||||||    
T  13244402 gtctaacacaagagga 13244417  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 13069917 - 13070080
Alignment:
Q  79 tgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttat 178  Q
    ||||||| |||||||||||| ||||||  || |  | || || |||||||| ||| ||| ||||| |||||||||||||||||||||| |||||||| ||    
T  13069917 tgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcat 13070016  T
Q  179 cctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagaggataatc 242  Q
    |||||||||||||  ||||| |||||||| || |||||||| |||   ||||||||||| ||||    
T  13070017 cctattgtggaagccaaaattattcaagaaataaaagataactggcccacacaagaggagaatc 13070080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 13271997 - 13271882
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 221  Q
    |||||||| ||| ||||||||| ||| |||||||| || |||||| |||||||| |||||| |||||||| |||| | |||||||||||||||||| |||    
T  13271997 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatcaaagatcatt 13271898  T
Q  222 ggttaacacaagagga 237  Q
    |  |||||||||||||    
T  13271897 gtctaacacaagagga 13271882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 262
Target Start/End: Complemental strand, 19727647 - 19727421
Alignment:
Q  36 taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaat 135  Q
    ||||||| |||| ||| ||||||  ||||||||| ||||| | ||||||| |||||||||||| |  ||| ||| |  | || || ||||||||  || |    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagt 19727548  T
Q  136 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagag 235  Q
    |||| ||| ||||||||||||||| |||||| |||| ||| |||||||||| ||||  ||||| |||||||| ||||||||||| |||   |||||||||    
T  19727547 tagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccacacaagag 19727448  T
Q  236 gataatcggattactttgagggatgtg 262  Q
    || || | || | ||||||| ||||||    
T  19727447 gagaaccagactcctttgagagatgtg 19727421  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 13214314 - 13214132
Alignment:
Q  35 gtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaa 134  Q
    |||||||| |||| ||| ||||||  ||||||||| |||||   ||||||| |||||||||||| |||  | ||| |  | || || ||||||||  ||     
T  13214314 gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccag 13214215  T
Q  135 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagat 217  Q
    || |||||| ||||| |||||||||||||||| |||||||| ||| |||||||||||  ||||| |||||||| || ||||||    
T  13214214 ttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 13204853 - 13204729
Alignment:
Q  136 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagag 235  Q
    |||||||| ||| ||||||||||| |||||| |||| ||| |||||||||||||||  ||||| |||||||| ||||||||||| ||    |||||||||    
T  13204853 tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag 13204754  T
Q  236 gataatcggattactttgagggatg 260  Q
    || |||| |||| ||| ||| ||||    
T  13204753 gagaatcagattccttcgagagatg 13204729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 19278952 - 19279068
Alignment:
Q  125 aatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggt 224  Q
    ||||| ||||||||||| | ||||| |||||| || |||||  | |||||| |||||||||| |||| |||||| |||||||||||||| | ||| || |    
T  19278952 aatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtt 19279051  T
Q  225 taacacaagaggataat 241  Q
    ||||| |||||||||||    
T  19279052 taacaaaagaggataat 19279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 12963692 - 12963791
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 221  Q
    |||| ||| ||| ||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||||   ||||| ||||||||||| ||||||||||    
T  12963692 ggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataatt 12963791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 13064952 - 13065097
Alignment:
Q  77 agtgagaagcatcttagagacactgcacttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaactt 176  Q
    ||||||||| ||||||||||||||||| | | | |  | || || ||||| || ||| ||||||||| |||||||||||| || |||||| |||||  |     
T  13064952 agtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtc 13065051  T
Q  177 atcctattgtggaagaaaaaatcattcaagagatcaaagataattg 222  Q
    ||||| |||||||||  || || ||||||||||| |||||||||||    
T  13065052 atcctgttgtggaagccaagattattcaagagatgaaagataattg 13065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 13080641 - 13080751
Alignment:
Q  117 ttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaaga 216  Q
    |||| |||||||| ||||||||| ||| ||||| ||||||||| |||||  |||||||  ||||||  || || |  ||||| |||||||||||||||||    
T  13080641 ttgcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaaga 13080740  T
Q  217 taattggttaa 227  Q
    |||||| ||||    
T  13080741 taattgtttaa 13080751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 13086518 - 13086399
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 221  Q
    |||| ||| ||| ||||||||| ||| |||||||| |  |||||| |||||||| ||   || |||||||  ||||| ||||||||||| ||||||||||    
T  13086518 ggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataatt 13086419  T
Q  222 ggttaacacaagaggataat 241  Q
    |  || |||| |||||||||    
T  13086418 gtctatcacatgaggataat 13086399  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 31396459 - 31396557
Alignment:
Q  122 ggaaatggtacaattagttcagctctcagttggtttttctggctt-ctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataa 219  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||  |||||||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  31396459 ggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagataa 31396557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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