View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10268_low_12 (Length: 267)
Name: NF10268_low_12
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10268_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 6185432 - 6185174
Alignment:
| Q |
1 |
ttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttct |
100 |
Q |
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| T |
6185432 |
ttgaaggcgaacaatttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttct |
6185333 |
T |
|
| Q |
101 |
aatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttca |
200 |
Q |
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| T |
6185332 |
aatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggactttca |
6185233 |
T |
|
| Q |
201 |
atgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatatttgatga |
259 |
Q |
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| T |
6185232 |
atgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatga |
6185174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4236308 - 4236050
Alignment:
| Q |
1 |
ttgaaggcgaacagtttcgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttct |
100 |
Q |
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||||||||||||| ||||| ||||| || ||||||||||| || | || ||||| ||||| | ||||||||||||||| ||||||||||| |||||||| |
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| T |
4236308 |
ttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatctctgtgatggcaagatcttctccatttgataaacttct |
4236209 |
T |
|
| Q |
101 |
aatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttca |
200 |
Q |
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| T |
4236208 |
aatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttca |
4236109 |
T |
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| Q |
201 |
atgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatatttgatga |
259 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4236108 |
atgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatga |
4236050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 38357184 - 38357009
Alignment:
| Q |
69 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
168 |
Q |
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|||||||||||||| || | ||||||||| | ||||| |||||||||| | | ||||||||||||||||| || ||||| || || ||||||||||||| |
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| T |
38357184 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
38357085 |
T |
|
| Q |
169 |
cggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatat |
244 |
Q |
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| T |
38357084 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatat |
38357009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 19593039 - 19592933
Alignment:
| Q |
153 |
ggaacaaacgatgcaccggcattgaaagaagccgatatcggtctttcaatgggaattcaaggtacagaagtagcaaaagagagttcagatattgttatat |
252 |
Q |
| |
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|||| ||| |||||| | ||| |||||||||| |||| | ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
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| Q |
253 |
ttgatga |
259 |
Q |
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| ||||| |
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| T |
19592939 |
tagatga |
19592933 |
T |
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