View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10268_low_16 (Length: 249)

Name: NF10268_low_16
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10268_low_16
NF10268_low_16
[»] chr1 (17 HSPs)
chr1 (1-203)||(28286345-28286547)
chr1 (14-106)||(9780997-9781089)
chr1 (14-105)||(28724713-28724804)
chr1 (14-103)||(18428153-18428241)
chr1 (9-105)||(7242816-7242912)
chr1 (9-103)||(12035585-12035680)
chr1 (8-105)||(22022155-22022252)
chr1 (33-105)||(42297451-42297523)
chr1 (39-100)||(32883561-32883622)
chr1 (14-103)||(36806652-36806741)
chr1 (8-105)||(39547373-39547470)
chr1 (9-104)||(24801417-24801512)
chr1 (44-105)||(15642526-15642587)
chr1 (8-105)||(16756117-16756214)
chr1 (48-105)||(34946454-34946511)
chr1 (62-102)||(10750686-10750726)
chr1 (8-60)||(32883624-32883676)
[»] chr4 (25 HSPs)
chr4 (8-105)||(31307075-31307172)
chr4 (8-105)||(38766124-38766221)
chr4 (14-105)||(51626315-51626406)
chr4 (8-106)||(46016184-46016282)
chr4 (19-105)||(35334107-35334193)
chr4 (8-103)||(13948603-13948698)
chr4 (8-105)||(9012305-9012402)
chr4 (8-103)||(14854640-14854735)
chr4 (14-103)||(17135137-17135226)
chr4 (8-105)||(35972378-35972475)
chr4 (14-103)||(38844179-38844268)
chr4 (41-105)||(33529325-33529389)
chr4 (9-105)||(46250564-46250660)
chr4 (14-105)||(45994563-45994654)
chr4 (31-105)||(32005155-32005229)
chr4 (29-98)||(56447139-56447207)
chr4 (40-103)||(3649057-3649120)
chr4 (40-103)||(3976641-3976704)
chr4 (40-103)||(47023469-47023532)
chr4 (8-104)||(13686636-13686733)
chr4 (44-105)||(18841556-18841617)
chr4 (40-101)||(31308364-31308425)
chr4 (40-104)||(24348742-24348806)
chr4 (31-107)||(28408545-28408621)
chr4 (41-105)||(51853765-51853828)
[»] chr5 (11 HSPs)
chr5 (9-105)||(31113370-31113466)
chr5 (8-103)||(10591962-10592057)
chr5 (14-105)||(5123507-5123598)
chr5 (9-102)||(18909313-18909406)
chr5 (8-105)||(22188007-22188102)
chr5 (39-105)||(36212962-36213028)
chr5 (8-75)||(2798354-2798421)
chr5 (8-75)||(2804521-2804588)
chr5 (8-105)||(30784995-30785092)
chr5 (9-105)||(18244620-18244716)
chr5 (28-103)||(3525864-3525940)
[»] chr7 (18 HSPs)
chr7 (8-105)||(8839290-8839387)
chr7 (8-105)||(29059840-29059937)
chr7 (8-105)||(31492138-31492235)
chr7 (8-105)||(19477259-19477355)
chr7 (30-100)||(14545000-14545070)
chr7 (14-98)||(13254117-13254201)
chr7 (8-103)||(11486755-11486850)
chr7 (29-102)||(21747052-21747125)
chr7 (8-103)||(23933662-23933757)
chr7 (32-103)||(42741820-42741890)
chr7 (29-102)||(7265325-7265398)
chr7 (40-105)||(20207564-20207629)
chr7 (50-103)||(29428803-29428856)
chr7 (56-105)||(37339742-37339791)
chr7 (8-105)||(28537425-28537518)
chr7 (41-104)||(25241135-25241198)
chr7 (62-102)||(24172298-24172338)
chr7 (66-98)||(31776511-31776543)
[»] chr3 (14 HSPs)
chr3 (14-105)||(1642647-1642738)
chr3 (8-105)||(27763756-27763853)
chr3 (8-105)||(30995974-30996071)
chr3 (14-105)||(20861289-20861380)
chr3 (8-105)||(39950247-39950344)
chr3 (14-105)||(40294653-40294744)
chr3 (14-105)||(38331169-38331260)
chr3 (29-105)||(14352614-14352689)
chr3 (14-102)||(55123138-55123226)
chr3 (61-105)||(8757432-8757476)
chr3 (9-93)||(48210981-48211065)
chr3 (30-105)||(25224756-25224831)
chr3 (8-105)||(48204320-48204417)
chr3 (62-102)||(15283160-15283200)
[»] scaffold0182 (1 HSPs)
scaffold0182 (8-105)||(26366-26463)
[»] chr8 (14 HSPs)
chr8 (8-105)||(4125033-4125130)
chr8 (8-105)||(2743968-2744065)
chr8 (8-105)||(12958094-12958191)
chr8 (8-103)||(36994511-36994606)
chr8 (8-105)||(13468754-13468851)
chr8 (14-103)||(15682970-15683059)
chr8 (14-105)||(30936045-30936136)
chr8 (8-105)||(19715734-19715832)
chr8 (29-105)||(7839262-7839338)
chr8 (15-103)||(30056012-30056100)
chr8 (9-105)||(24988530-24988631)
chr8 (8-59)||(27121805-27121856)
chr8 (8-105)||(16701388-16701485)
chr8 (14-102)||(44639024-44639112)
[»] chr6 (11 HSPs)
chr6 (14-104)||(12411189-12411279)
chr6 (8-105)||(28099278-28099375)
chr6 (31-104)||(31412180-31412253)
chr6 (8-104)||(12836907-12837003)
chr6 (8-105)||(21910240-21910336)
chr6 (39-93)||(5944908-5944962)
chr6 (8-100)||(423690-423782)
chr6 (30-105)||(21028851-21028924)
chr6 (30-105)||(21028988-21029061)
chr6 (47-105)||(9536841-9536899)
chr6 (70-106)||(17177235-17177271)
[»] chr2 (14 HSPs)
chr2 (8-105)||(5394432-5394528)
chr2 (8-105)||(31579238-31579335)
chr2 (9-100)||(9438150-9438241)
chr2 (8-103)||(42745127-42745222)
chr2 (8-103)||(18105373-18105468)
chr2 (8-71)||(44732616-44732679)
chr2 (8-86)||(12133258-12133336)
chr2 (8-102)||(37180013-37180102)
chr2 (61-103)||(25423832-25423874)
chr2 (14-102)||(14121894-14121982)
chr2 (29-105)||(38743794-38743870)
chr2 (54-105)||(14551555-14551606)
chr2 (14-84)||(13986967-13987037)
chr2 (14-84)||(13992865-13992935)
[»] scaffold0009 (1 HSPs)
scaffold0009 (43-102)||(27237-27296)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28286547 - 28286345
Alignment:
Q  1 attaatggggttagaatccagccttgaacatgcagca--gtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggatta 98  Q
    |||||||||||| |||||||||||||| ||||||| |  ||||||||| ||||||| ||||||||||||||||||  |||||||||||| ||| | ||||    
T  28286547 attaatggggttcgaatccagccttga-catgcagaaatgtgttaaaatttttagggagagtctgccgcccatttaaatcccacaatacccgatgaatta 28286449  T
Q  99 gtctccgtgttgaggatacctagtttacaccaattttcattcatcgtcttctatctaatcttcttcattaggatcatccactagcctcgactctgaattc 198  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28286448 gtctccgtgttgag-atacccagtttacaccaattttcattcatcgtcttcaatctaatcttcttcatgaggatcatccactagcctcgactctgaattc 28286350  T
Q  199 cctgc 203  Q
    |||||    
T  28286349 cctgc 28286345  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 9781089 - 9780997
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccgt 106  Q
    |||||||||||||  |||||||||| ||||||||| ||||| |||||| ||||||||||||| ||||||||| |||||||||||||| |||||    
T  9781089 gaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgt 9780997  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 28724713 - 28724804
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||  ||| |||||  ||||||||||||||||||    
T  28724713 gaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccg 28724804  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 18428241 - 18428153
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||| |||||  |||||||||||||||||||||||||| ||||||||| | ||||||||  |||||||| |||||||||||||||||    
T  18428241 gaatccaaccttgggcatgcagcagtgttaaaacttttagggagagtctgctgtccatttgg-ccccacaatgctcgagggattagtctc 18428153  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 7242912 - 7242816
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| |||||||| |||| ||||||||||  ||||||||| ||||| ||||||| || |||||||| ||| || |||||||||||||||||||||||    
T  7242912 ggttcgaatccagtcttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccg 7242816  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 12035585 - 12035680
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaa-cttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||| ||||||||||||   |||||| || |||||||| || ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  12035585 ggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 22022155 - 22022252
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  ||||||||||  |||||||| ||||| |||   |||| ||||||||| |||||||||| ||||||||||||||||||    
T  22022155 gggttcgaatccagccttgggcatgcagcagcattaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccg 22022252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 42297523 - 42297451
Alignment:
Q  33 cagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||    
T  42297523 cagcagcgttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccg 42297451  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  39 tgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagt 100  Q
    |||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||||||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 36806652 - 36806741
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||| ||||||||  ||| ||| || ||||||||| ||||| || ||||||||||||||||| | ||||||| |||||||||||||||||    
T  36806652 gaattcagccttgggcatacagtagcgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctc 36806741  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 39547470 - 39547373
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||| ||||| ||||||||||||| |||||| |||||  |||||||||||| |||| | || ||||||  |||| |||||| ||||||    
T  39547470 gggttcgaatccagtcttgagcatgcagcagtgtcaaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccg 39547373  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 24801417 - 24801512
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    |||| ||||||||||||   ||||||||| |||||||||| ||||| ||||| | ||| |||||||  |||||||| |||| || |||||||||||    
T  24801417 ggttcgaatccagccttaggcatgcagcactgttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 15642526 - 15642587
Alignment:
Q  44 aaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||| |||||| ||||| ||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccg 15642587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 16756117 - 16756214
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||| |||| |||  ||||||| || ||||||||| ||||| ||||  || ||  ||||||| ||||||||| |||||||||||||||||||    
T  16756117 gggtttgaattcagcattgggcatgcagaagcgttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccg 16756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 34946454 - 34946511
Alignment:
Q  48 ttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||||| ||||| ||||||  ||||||||| |||||||  |||||||||||    
T  34946454 ttttaggaagagtttgccgtccatttaaatcccacaagactcgagaaattagtctccg 34946511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 10750686 - 10750726
Alignment:
Q  62 tgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  10750686 tgccgcccatttggatcgcacaatgttcgagggattagtct 10750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32883676 - 32883624
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagt 60  Q
    ||||| ||||||||| ||| ||||||||||| ||||||||| ||||| |||||    
T  32883676 gggttcgaatccagcattggacatgcagcagcgttaaaactcttagggagagt 32883624  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 31307172 - 31307075
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  31307172 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccg 31307075  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 38766124 - 38766221
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||| ||||||||| ||||| |||||||||||||||||||| || |||||| |||||||||||||||||||    
T  38766124 gggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccg 38766221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 51626406 - 51626315
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| | |||||| ||||||||||||    
T  51626406 gaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccg 51626315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 46016184 - 46016282
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccgt 106  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  46016184 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgt 46016282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 35334193 - 35334107
Alignment:
Q  19 cagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||  |||||||||| ||||||||| ||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  35334193 cagccttgggcatgcagcagagttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccg 35334107  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 13948698 - 13948603
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||||||||   ||||||||||||||||||| ||||| ||||||| ||| ||||||| ||| |||||| |||||||||||||||||    
T  13948698 gggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctc 13948603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 9012305 - 9012402
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||| |||||||  |||||||||||||| ||||| ||||| ||||  ||||||||| |||| ||||||||| |||||||||||||||||||    
T  9012305 gggttcgaatctagccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccg 9012402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 14854640 - 14854735
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||||||||  |||||||||  ||||||||| ||||| ||||  |||||||||||||| ||| ||||| |||||||||||||||||    
T  14854640 gggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctc 14854735  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 17135137 - 17135226
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||||||||||||  |||||||||| ||||||||| ||||| ||||| |||||| ||||||  ||||| || ||||||||||||||||||    
T  17135137 gaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctc 17135226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 35972378 - 35972475
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||| ||  ||| |||||| ||||||||| ||||| ||||| |||||||||||||| |||||| ||  ||||||||||||||||||    
T  35972378 gggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccg 35972475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 38844268 - 38844179
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||| |||  |||||| ||| ||||||||| |||||||||||||||||||||||||   |||||||| |||||| ||||||||||    
T  38844268 gaatccagctttgggcatgcaacagcgttaaaactcttaggaagagtctgccgcccatttgacccccacaatgctcgagagattagtctc 38844179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 33529325 - 33529389
Alignment:
Q  41 ttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||| ||||| ||||  |||||||||||||| |||||||||||| ||||||||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccg 33529389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 46250660 - 46250564
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| |||||||| ||||  |||||||||||||||||||| ||| | | || ||||||||||||||| |||||| || ||||| | |||||||||||    
T  46250660 ggttcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccg 46250564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 45994563 - 45994654
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||||||  |||||| ||  ||||||||| ||||| |||| ||| ||||||||||| || |||||| |||||| ||||||||||||    
T  45994563 gaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccg 45994654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 32005229 - 32005155
Alignment:
Q  31 tgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| ||||||||||||| ||||| ||||||||||||| |||| |||| || ||| |||||| ||||||||||||    
T  32005229 tgcatcagtgttaaaactcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtctccg 32005155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 56447207 - 56447139
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggatta 98  Q
    |||||||||||||||||||| ||||| ||||| |||  ||||||||||| |||||| ||| |||||||||    
T  56447207 catgcagcagtgttaaaactcttagggagagtttgctacccatttggat-ccacaagacttgagggatta 56447139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 3649120 - 3649057
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||| ||||| ||||| | |||| |||||||||| ||||| |||||| |||||||||||    
T  3649120 gttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtctc 3649057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 3976641 - 3976704
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||||||||| ||| | | ||||||||||||||||||||| |||||  ||||| |||||    
T  3976641 gttaaaacttttagggagattttaccgcccatttggatcccacaagactcgtaggattggtctc 3976704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 47023469 - 47023532
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||| ||||| ||||| || || |||||||| |||||||| |||||| |||||||||||    
T  47023469 gttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 13686636 - 13686733
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaactttta-ggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    ||||| ||||||| |||||  | |||||||| ||||||||| ||| || ||||| ||||| |||||||| || |||||  |||||| |||||||||||    
T  13686636 gggttcgaatccatccttgggcgtgcagcagcgttaaaactcttaagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctcc 13686733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 18841556 - 18841617
Alignment:
Q  44 aaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||  ||| |||||||||||||||    
T  18841556 aaactcttaggtagagtttgccgccaatttggatcctacaaggctcaagggattagtctccg 18841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 31308364 - 31308425
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtc 101  Q
    ||||||||| ||||||||||||||||| | |||| | |||||||||  | ||||||||||||    
T  31308364 gttaaaactcttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtc 31308425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 24348742 - 24348806
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    ||||||||||||| | ||||| ||||| |||||||||||||| || | || || |||||||||||    
T  24348742 gttaaaacttttaaggagagtttgccgtccatttggatcccataagagtcaagagattagtctcc 24348806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 28408545 - 28408621
Alignment:
Q  31 tgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccgtg 107  Q
    |||||||  ||||||| | ||| | ||||| ||||||||||||||||| ||||| ||||||| || |||| ||||||    
T  28408545 tgcagcatcgttaaaattcttatggagagtttgccgcccatttggatctcacaagactcgagagaatagtttccgtg 28408621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 51853765 - 51853828
Alignment:
Q  41 ttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||| ||||||| ||| ||| | |||||| | || ||||||||||||||||||||||||||    
T  51853765 ttaaaactcttaggaa-agtttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 31113370 - 31113466
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| |||| ||||||||  |||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31113370 ggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccg 31113466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 10591962 - 10592057
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||| |||||||||||||||||    
T  10591962 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctc 10592057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 5123598 - 5123507
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| ||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccg 5123507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 18909406 - 18909313
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    |||| |||||||||||||   ||||||||||||||||||| ||||| ||| | |||||| |||||| |||||||||| ||||||||||||||||    
T  18909406 ggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 22188102 - 22188007
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  ||| || ||| ||||||||| || |  ||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  22188102 gggtttgaatccagccttgggcatacaacagcgttaaaactcttgg--agagtctgccgcctatttgggtcccacaatactagagggattagtctccg 22188007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 36212962 - 36213028
Alignment:
Q  39 tgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||| ||||| ||||| |||||||||||| | ||||||||| ||||||||||| |||||||    
T  36212962 tgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccg 36213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 2798421 - 2798354
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttgg 75  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||||| ||||  | ||||||||||||    
T  2798421 gggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagcttaccgcccatttgg 2798354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 2804588 - 2804521
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttgg 75  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||||| ||||  | ||||||||||||    
T  2804588 gggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagcttaccgcccatttgg 2804521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 30785092 - 30784995
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||||||| ||| ||||||||||  ||||||||| ||||| ||| ||||||  |||||| | || ||||||  || |||||||||||||||    
T  30785092 gggttcgaatccagctttggacatgcagcaacgttaaaactcttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccg 30784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 18244620 - 18244716
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||| |||| ||| ||||||||||||||||  |||||||| || || ||| | | || ||||||||| | |||||||||| ||| ||||||||||||    
T  18244620 ggtttgaattcagtcttgaacatgcagcagcattaaaactctttgggagatttttccacccatttgggttccacaatacttgagagattagtctccg 18244716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 3525940 - 3525864
Alignment:
Q  28 acatgcagcagtgttaaaacttttaggaagagtctgccgcccatttgga-tcccacaatactcgagggattagtctc 103  Q
    ||||||| || |||||||||||||||| ||||| ||||||| |||| || |||||||| |||   ||||||||||||    
T  3525940 acatgcaacattgttaaaacttttagggagagtttgccgcctatttagattcccacaagactaaggggattagtctc 3525864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 8839387 - 8839290
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||| ||||||||| ||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||    
T  8839387 gggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctccg 8839290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 29059840 - 29059937
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| || ||||||||||||||||    
T  29059840 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccg 29059937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 31492138 - 31492235
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||| | ||||||||| |||||||||||||||||||    
T  31492138 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccg 31492235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 19477355 - 19477259
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||| ||||||||||||| ||||| ||||  ||||| |||||||| ||||||||| || ||||||||||||||||    
T  19477355 gggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccg 19477259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 14545000 - 14545070
Alignment:
Q  30 atgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagt 100  Q
    ||||||||||||||||||| ||||| |||| |||||| |||||||| ||||||||| ||||| ||||||||    
T  14545000 atgcagcagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 13254201 - 13254117
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggatta 98  Q
    ||||||||||||   |||||||||| ||| ||||| ||||| |||| ||||||||||||| | ||||||||| ||||||||||||    
T  13254201 gaatccagccttaggcatgcagcagcgttgaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 11486850 - 11486755
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||||| ||||||||||||  |||||| | ||||||||||| ||| ||||||  |||||||||||||| | ||||||| ||| || ||||||||||    
T  11486850 gggttaaaatccagccttgggcatgcatctgtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctc 11486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 21747125 - 21747052
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||| |||| ||||||||| ||||| |||| || || ||||||||| ||||||||| ||||||||||||||||    
T  21747125 catgctgcagcgttaaaactcttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtct 21747052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 23933757 - 23933662
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||| ||||| | ||||  ||  |||||||||||||| ||||| |||||||||||| | | | |||||||| ||||||||||||||    
T  23933757 gggttcgaatccagtcttgagcttgcaagagcattaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctc 23933662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42741890 - 42741820
Alignment:
Q  32 gcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||| | ||| |||||||||||||||| ||||    
T  42741890 gcagcagtgttaaaacttttagggagaacctgccacccatttgggt-ccataatactcgagggattaatctc 42741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 7265398 - 7265325
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||||||  |||||||||| ||||| ||||| ||| || ||||||| |||||||||||||||  |||||||||    
T  7265398 catgcagcgatgttaaaactcttagggagagtttgctgctcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 20207564 - 20207629
Alignment:
Q  40 gttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||| ||| | ||||  |||||| ||||||||||| ||||| |||||||||||||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccg 20207629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 29428856 - 29428803
Alignment:
Q  50 ttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| ||||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  29428856 ttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctc 29428803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 37339791 - 37339742
Alignment:
Q  56 agagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||||| |||||| ||||| ||| |||||||||||||||||||    
T  37339791 agagtctgccgcctatttgggtcccataatgctcgagggattagtctccg 37339742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 28537425 - 28537518
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||| ||  ||||||||| ||||| |||| ||||||||||||||| |||    || || ||||||||||||||||    
T  28537425 gggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgccgcccatttgggtcc----atgcttgagggattagtctccg 28537518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 25241198 - 25241135
Alignment:
Q  41 ttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    |||||||||||||| ||||| || |||||||||  ||| ||||| ||||||| |||||||||||    
T  25241198 ttaaaacttttagggagagtttgtcgcccatttaaatctcacaagactcgagagattagtctcc 25241135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 24172298 - 24172338
Alignment:
Q  62 tgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  24172298 tgccgcccacttggatcccacaatgctcgaaggattagtct 24172338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 31776511 - 31776543
Alignment:
Q  66 gcccatttggatcccacaatactcgagggatta 98  Q
    |||||||||| ||||||||||||||||||||||    
T  31776511 gcccatttgggtcccacaatactcgagggatta 31776543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 1642647 - 1642738
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||| |||||||||||| ||||||||||| ||||    
T  1642647 gaatctagccttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccg 1642738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 27763756 - 27763853
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  ||| || ||||||||||||| ||||| ||||||||||| |||||||  ||||||||| |||||||||||||||||||    
T  27763756 gggttcgaatccagccttgggcatacaacagtgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccg 27763853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 30996071 - 30995974
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||||  |||||  |||||| ||| ||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  30996071 gggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccg 30995974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 20861289 - 20861380
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||| |||  |||||||||| ||||||||| ||||| |||| ||||||||||||||| | ||| ||| |||||||||||||||||||    
T  20861289 gaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccg 20861380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 39950247 - 39950344
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||||||  ||| ||||||||||| ||||||| ||||||| ||| |||| ||  ||||||||||| ||||| ||||| |||||||||||||    
T  39950247 gggttagaatccagttttggacatgcagcagcgttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccg 39950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 40294653 - 40294744
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||||| | ||||| || |||||||||| ||||| | ||  |||||| |||||| |||||||||||||||| |||||||||||||    
T  40294653 gaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccg 40294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 38331169 - 38331260
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||| | |||| |||||||||| ||||||||| ||||  ||||  |||||||||||||| |||||||||  | ||||||||||||||||    
T  38331169 gaatccaactttgagcatgcagcagcgttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccg 38331260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 14352614 - 14352689
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||||||||||||| ||| | ||||  || || |||||||||| || ||||||||||||||||||||||||    
T  14352614 catgcagcagtgttaaaactcttacggagagcttgtcgtccatttggatacc-caatactcgagggattagtctccg 14352689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 55123138 - 55123226
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||||||||||| | ||||||||| ||||||| | ||||| ||||  |||  ||||||||| || |||||| ||||||||||||||||    
T  55123138 gaatccagccttggaaatgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtct 55123226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 8757432 - 8757476
Alignment:
Q  61 ctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||    
T  8757432 ctgccgcctatttgggtcccacaatgctcgagggattagtctccg 8757476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 48211065 - 48210981
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagg 93  Q
    |||| |||||||||||||| |||||||||  ||||||||| ||| | ||||  ||||| | |||| | |||||||||||||||||    
T  48211065 ggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgagg 48210981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 25224756 - 25224831
Alignment:
Q  30 atgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||| ||||||||| ||| | |||   |||||||||||| | ||||||||| ||| |||||||||||||||    
T  25224756 atgcagcagcgttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccg 25224831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 48204417 - 48204320
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||  ||||||||  ||||| ||||  || || |||||||| | ||||||| ||| |||||||||| ||||    
T  48204417 gggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccg 48204320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 15283160 - 15283200
Alignment:
Q  62 tgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    |||||||||||||| ||||||||| |||||| |||||||||    
T  15283160 tgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 26366 - 26463
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||  ||||| ||||||||||||    
T  26366 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccg 26463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 4125130 - 4125033
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||| |||||||  ||||||||| |||||||||| ||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  4125130 gggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccg 4125033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 2743968 - 2744065
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| ||||  || || |||||||| ||||||||| |||||||||||||||||||    
T  2743968 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccg 2744065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 12958191 - 12958094
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||||||| |||  |||||||||| ||||||||| ||||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||    
T  12958191 gggtttgaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccg 12958094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 36994606 - 36994511
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| ||| | ||||| ||| |||||||||| ||||||||  |||||||||||||||||    
T  36994606 gggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctc 36994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 13468851 - 13468754
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||| ||||| ||||||||| ||||  |||||||||||||||||||  ||||||||| ||||| |||||||||||||    
T  13468851 gggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccg 13468754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 15682970 - 15683059
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||||||||||||  |||||||||| ||||||||| ||||| |||| ||||||||||||| | ||||||||| |||||||||||| ||||    
T  15682970 gaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 30936045 - 30936136
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||||| | |||||||||  ||||||||| ||||| |||| ||||||||||||||| ||| |||||  ||||||||||||||||||    
T  30936045 gaatccagccttaagcatgcagcaacgttaaaactcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccg 30936136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 19715832 - 19715734
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcga-gggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||| ||||||||| | ||| ||||  |||||||||||||| ||||||||| ||||| ||||||||||||||    
T  19715832 gggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccg 19715734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 7839338 - 7839262
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||  |||||||| ||||| ||||  |||||||||||||| ||||||||| |||||||||||||||||||    
T  7839338 catgcagcagctttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccg 7839262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 30056100 - 30056012
Alignment:
Q  15 aatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||||||||||   ||||||||||  |||||||| ||||| |||| |||||| |||||||| | ||||||| |||||||||||||||||    
T  30056100 aatccagccttaggcatgcagcagcattaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 24988530 - 24988631
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaag-----agtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    |||| |||||||||||||  |||||||||||| ||||||| || || ||     ||  |||||| ||||||  |||||||||||||||||||||||||||    
T  24988530 ggtttgaatccagccttgggcatgcagcagtgctaaaactcttggggaggggatagcttgccgctcatttgagtcccacaatactcgagggattagtctc 24988629  T
Q  104 cg 105  Q
    ||    
T  24988630 cg 24988631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 27121856 - 27121805
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagag 59  Q
    ||||| ||||||||| || | |||||| ||||||||||||||||||||||||    
T  27121856 gggttcgaatccagctttaagcatgcaacagtgttaaaacttttaggaagag 27121805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 16701485 - 16701388
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| ||||||||||||| |||| ||| ||  ||||| || ||||| ||||| ||  |||||||||  |||||||| | ||||| ||||||||||||    
T  16701485 gggttcgaatccagccttggacatacagtagctttaaacctcttagggagagtttgtagcccatttgagtcccacaagattcgagagattagtctccg 16701388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 44639024 - 44639112
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||||| |||||| |||||| ||  ||||||||| ||||| ||||| |||||| ||||||   ||||||||||| | | |||||||||    
T  44639024 gaatccaaccttgagcatgcaacaacgttaaaactcttagggagagtttgccgcacatttgagccccacaatacttgggagattagtct 44639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 12411189 - 12411279
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    |||||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||   ||||||||| || |||||||||||||||    
T  12411189 gaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctcc 12411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 28099278 - 28099375
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||| ||| | || || |||||||  | ||| ||| |||||||||||||||||||    
T  28099278 gggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagggattagtctccg 28099375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 31412180 - 31412253
Alignment:
Q  31 tgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| | ||||||| ||||||  ||||||||||    
T  31412180 tgcagcagtgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctcc 31412253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 12837003 - 12836907
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctcc 104  Q
    ||||| ||||||||||||   |||||||||| ||||||||| ||||| ||||   ||||||||||||| ||||||||| || |||||||||||||||    
T  12837003 gggttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctcc 12836907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 21910240 - 21910336
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||| ||  ||||||||| ||||  |||||||||||| ||||| | ||||||||||||| |||||||||||||||    
T  21910240 gggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccg 21910336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 5944908 - 5944962
Alignment:
Q  39 tgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagg 93  Q
    |||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||    
T  5944908 tgttaaaacttttagggagagtttgccgcccatttagatcctacaatactcgagg 5944962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 423690 - 423782
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagt 100  Q
    ||||| |||||||||||||  ||||| |||| ||||||||| ||||  | |  |||||| |||||||  ||||||||| ||||||||||||||    
T  423690 gggtttgaatccagccttgggcatgctgcagcgttaaaactcttagagataaactgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 21028924 - 21028851
Alignment:
Q  30 atgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||| ||||||||| ||||  ||||| |||||||||||||| | ||||||  ||| |||||||||||||||    
T  21028924 atgcagcagcgttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccg 21028851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 21029061 - 21028988
Alignment:
Q  30 atgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||| ||||||||| ||||  ||||| |||||||||||||| | ||||||  ||| |||||||||||||||    
T  21029061 atgcagcagcgttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccg 21028988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 9536841 - 9536899
Alignment:
Q  47 cttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||| |||| || ||| |||||| ||| ||||||| |||||||||||||||||||    
T  9536841 cttttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccg 9536899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 17177235 - 17177271
Alignment:
Q  70 atttggatcccacaatactcgagggattagtctccgt 106  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgt 17177271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 5394432 - 5394528
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||| |||| ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  5394432 gggttcgaatccagccttgggcatgcagca-tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccg 5394528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 31579335 - 31579238
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||   ||||||||| ||||||| |||||| ||||    
T  31579335 gggttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccg 31579238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 9438241 - 9438150
Alignment:
Q  9 ggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagt 100  Q
    |||| |||||||||||||  |||||||||| ||||||||| |||||||||  ||||||||||||||  ||||||||| || |||||||||||    
T  9438241 ggttcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagt 9438150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 42745222 - 42745127
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||| ||||||||| ||| |||||| | |||||||  ||||||||||||||||    
T  42745222 gggttcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctc 42745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 18105468 - 18105373
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||| |||||||||||||  |||||| ||  ||||||| | ||| | |||| ||||||||||||||  || ||||||||||||||||||||||||    
T  18105468 gggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcctgccgcccatttgagtctcacaatactcgagggattagtctc 18105373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 44732679 - 44732616
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccat 71  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||||| |||| |||||||||||    
T  44732679 gggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccat 44732616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 12133336 - 12133258
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaata 86  Q
    ||||| ||||||||||||| ||||||||||  ||||||||| ||||| |||| |||||| |||||||| ||| ||||||    
T  12133336 gggttcgaatccagccttggacatgcagcaacgttaaaactcttagggagagcctgccgtccatttgggtcctacaata 12133258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 37180102 - 37180013
Alignment:
Q  8 gggttagaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    ||||| |||||||| |||| ||||||| ||||||     || ||||| ||||| |||||||||||||  ||||||||||||||||||||||||||    
T  37180102 gggttcgaatccagtcttggacatgcaacagtgt-----ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtct 37180013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 25423832 - 25423874
Alignment:
Q  61 ctgccgcccatttggatcccacaatactcgagggattagtctc 103  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  25423832 ctgccgcccatttgggtcccacaatgctcgagggattagtctc 25423874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 14121982 - 14121894
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
    |||| ||| |||||||||||||||  ||||||| | ||||  |||   |||||||||||||  ||||||||| ||||||||||||||||    
T  14121982 gaattcagtcttgaacatgcagcaacgttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 38743794 - 38743870
Alignment:
Q  29 catgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    |||||||||  |||||||||||| || ||||  |||||| |||||||||| |||||| ||  |||||||||||||||    
T  38743794 catgcagcaacgttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtctccg 38743870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 14551555 - 14551606
Alignment:
Q  54 gaagagtctgccgcccatttggatcccacaatactcgagggattagtctccg 105  Q
    ||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||    
T  14551555 gaagagtctgccgcctatttgggtcctacaatgctcgagggattaatctccg 14551606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 13987037 - 13986967
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaa 84  Q
    ||||||| |||||| ||||||| ||||| |||||||||||| ||||| ||||||  |||||  ||||||||    
T  13987037 gaatccaaccttgagcatgcagtagtgtaaaaacttttagggagagtttgccgcttatttgagtcccacaa 13986967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 13992935 - 13992865
Alignment:
Q  14 gaatccagccttgaacatgcagcagtgttaaaacttttaggaagagtctgccgcccatttggatcccacaa 84  Q
    ||||||| |||||| ||||||| ||||| |||||||||||| ||||| ||||||  |||||  ||||||||    
T  13992935 gaatccaaccttgagcatgcagtagtgtaaaaacttttagggagagtttgccgcttatttgagtcccacaa 13992865  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 27296 - 27237
Alignment:
Q  43 aaaacttttaggaagagtctgccgcccatttggatcccacaatactcgagggattagtct 102  Q
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T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtct 27237  T

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