View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10268_low_24 (Length: 229)
Name: NF10268_low_24
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10268_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 28286717 - 28286857
Alignment:
| Q |
45 |
gagaaaaacccgaattctttcttctctacctcgtcccaattgtttcccacttctagttttcttctcaaaaccaaacccaacaatggcgaaatcatcgaaa |
144 |
Q |
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| T |
28286717 |
gagaaaaaccctaattctttcttctctacctcgtcc-aattgtttcccacttctagttttcttctcaaaaccaaacccaacaatggcgaaatcatcgaaa |
28286815 |
T |
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| Q |
145 |
cgcagcatcgccaacggaaccaacaacaacaccaccaccagc |
186 |
Q |
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| T |
28286816 |
cgcagcatcgccaacggaaccaacaacaacaccaccaccagc |
28286857 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 15941836 - 15941897
Alignment:
| Q |
108 |
ctcaaaaccaaacccaacaatggcgaaatcatcgaaacgcagcatcgccaacggaaccaaca |
169 |
Q |
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| T |
15941836 |
ctcaaaaccaaacccaacaatggcgaaatcatcaaaacgcagcatcgccaacggaaccaaca |
15941897 |
T |
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