View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10268_low_3 (Length: 442)
Name: NF10268_low_3
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10268_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 5396218 - 5395810
Alignment:
| Q |
1 |
ggacaattggaccagggtaagggacccttaaactgaatagcagtagtaaaaataataaggtcttgttaacgagtgttttcggatcattcgttaagcattt |
100 |
Q |
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| T |
5396218 |
ggacaattggaccagggtaagggacccttaaactgaatagcag---------------ggtcttgttaacgagtgttttcggatcattcgttaagcattt |
5396134 |
T |
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| Q |
101 |
tactttaagaaaatattcttataaaaaagtcaaatatcacaattttcgatatattggatacggaaacttttataaaaacttaccttttaaggtcctgagt |
200 |
Q |
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| T |
5396133 |
tactttaagaaaatattcttataaaaaagtcaaatatcacaatttccaatatattggatacggaaacttttataaaaacttaccttttaaggtcctgagt |
5396034 |
T |
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| Q |
201 |
gctctaggggcactcgtcggcatttctcaaataatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagatt |
300 |
Q |
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| T |
5396033 |
gctctaggggcactcgttggcatttcccaaataatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagctt |
5395934 |
T |
|
| Q |
301 |
ttaatagcatgtcacctataatacacaaacatcatgattcaacatcacattatctttgaaaagnnnnnnnnnntgaactggtggttagctaaagcatctg |
400 |
Q |
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| T |
5395933 |
ttaatagcatgtcacctatactacacaaacatcatgattcaacatcacattatctttgaaaagaaaaaaaaaatgaactggtggttagctaaagcatctg |
5395834 |
T |
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| Q |
401 |
gcactgtcaaagcaagttatttaa |
424 |
Q |
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| T |
5395833 |
gcactggcaaagcaagttatttaa |
5395810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 5392037 - 5391993
Alignment:
| Q |
374 |
tgaactggtggttagctaaagcatctggcactgtcaaagcaagtt |
418 |
Q |
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| T |
5392037 |
tgaactggtggttagctaaagcaactggcactggcaaagcaagtt |
5391993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5392330 - 5392280
Alignment:
| Q |
1 |
ggacaattggaccagggtaagggacccttaaactgaatagcagtagtaaaa |
51 |
Q |
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||||||||||| | |||||||||||||||||||||||||| | |||||||| |
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| T |
5392330 |
ggacaattggatcggggtaagggacccttaaactgaatagtaatagtaaaa |
5392280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 14166597 - 14166653
Alignment:
| Q |
56 |
taaggtcttgttaacgagtgttttc-ggatcattcgttaagcattttactttaagaaa |
112 |
Q |
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| T |
14166597 |
taaggtcttgttaacgagtgctttcaggat-attctttaagcattttactttaagaaa |
14166653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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