View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10268_low_4 (Length: 430)

Name: NF10268_low_4
Description: NF10268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10268_low_4
NF10268_low_4
[»] chr5 (1 HSPs)
chr5 (17-422)||(18906745-18907162)
[»] chr4 (3 HSPs)
chr4 (18-127)||(54580719-54580828)
chr4 (18-127)||(45277743-45277852)
chr4 (276-400)||(45277954-45278078)
[»] chr3 (3 HSPs)
chr3 (274-401)||(12821989-12822116)
chr3 (274-401)||(12827631-12827758)
chr3 (24-126)||(12829064-12829166)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 18906745 - 18907162
Alignment:
Q  17 agaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18906745 agaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaaatgacactttgcatgtccatgctttccagttttagaagttgaaact 18906844  T
Q  117 tcaactacctatctccaacacaaacaaaaaccataacaaataaatcatatatgatttgattaatcaatcatacaaaaaattgttacaatatcaatatatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  18906845 tcaactacctatctccaacacaaacaaaaaccataacaaataaatcatacatgatttgattaatcaatcatacaaaaaactgaaacaatatcaatatatt 18906944  T
Q  217 tcaaaaagtcaacacaacatggtgcaagtaaaaatg------------nnnnnnnnnncattagaaaagaaaccttgcagggtctgtttttgataacaat 304  Q
    ||||||||||||||||||||||||||||||||||||                      ||| ||||||||||||||||||||||||||||| ||||||||    
T  18906945 tcaaaaagtcaacacaacatggtgcaagtaaaaatgatcaaaaatgaagaaaaaaaaacataagaaaagaaaccttgcagggtctgttttttataacaat 18907044  T
Q  305 gtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcatctgctttggactcaaaatggtgttcctcgtctgacatgttt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18907045 gtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcatctgctttggactcaaaatggtgttcctcgtctgacatgttt 18907144  T
Q  405 tacttctttgttcttctc 422  Q
     |||||||||||||||||    
T  18907145 cacttctttgttcttctc 18907162  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 54580719 - 54580828
Alignment:
Q  18 gaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaactt 117  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |    
T  54580719 gaaggaacaatatcttcaagttttttcccattgaagatatcaatagcaacaaagtgacactttgcatgtccatgctttcctgtttttgaagtagaaacct 54580818  T
Q  118 caactaccta 127  Q
    |||| |||||    
T  54580819 caacaaccta 54580828  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 45277743 - 45277852
Alignment:
Q  18 gaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaactt 117  Q
    |||||||| |||||||||||||| |||  ||||||||| |||||| ||||||||||||| || ||||| || |||||||||||||| || || |||||||    
T  45277743 gaaggaacgatatcttcaagtttcttggaagtgaagatgtcaatagcaacaaagtgacatttagcatgaccgtgctttccagttttcgaggtggaaactt 45277842  T
Q  118 caactaccta 127  Q
    |||| |||||    
T  45277843 caacaaccta 45277852  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 45277954 - 45278078
Alignment:
Q  276 accttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcatctgctttggact 375  Q
    ||||||||||| | |||||||||||| ||||  || || ||||||||||| ||||||||||| || || || || || || |||||||| || ||||| |    
T  45277954 accttgcagggacggtttttgataacgatgtagccgttcttgcggattgttccagcttgttgagggtaagttttggaggcaccagcatcggccttggatt 45278053  T
Q  376 caaaatggtgttcctcgtctgacat 400  Q
    | || ||||| || ||||| |||||    
T  45278054 cgaattggtgctcttcgtcagacat 45278078  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 12822116 - 12821989
Alignment:
Q  274 aaaccttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcatctgctttgga 373  Q
    ||||||||||||| |  ||||||||||| |||| ||||||||||||||| || || |||||||| ||||| |||||||| ||||| ||||| ||||| ||    
T  12822116 aaaccttgcagggacgatttttgataacgatgtaaccatttttgcggatggttccggcttgttgaggataagtctttgaagctccggcatcggcttttga 12822017  T
Q  374 ctcaaaatggtgttcctcgtctgacatg 401  Q
    |||||| |||||||||||||| ||||||    
T  12822016 ctcaaagtggtgttcctcgtcagacatg 12821989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 12827758 - 12827631
Alignment:
Q  274 aaaccttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcatctgctttgga 373  Q
    ||||||||||||| |  ||||||||||| |||| ||||||||||||||| || || |||||||| ||||| |||||||| ||||| ||||| ||||| ||    
T  12827758 aaaccttgcagggacgatttttgataacgatgtaaccatttttgcggatggttccggcttgttgaggataagtctttgaagctccggcatcggcttttga 12827659  T
Q  374 ctcaaaatggtgttcctcgtctgacatg 401  Q
    |||||| |||||||||||||| ||||||    
T  12827658 ctcaaagtggtgttcctcgtcagacatg 12827631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 12829166 - 12829064
Alignment:
Q  24 acaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaacttcaacta 123  Q
    |||||||||||||| |||||   |||||| ||||||||  |||||||||| ||||| |||||||||||||| || || || ||||||||||| ||||| |    
T  12829166 acaatatcttcaagctttttagaagtgaaaatatcaattgcaacaaagtggcacttagcatgtccatgcttaccggtctttgaagttgaaacctcaacaa 12829067  T
Q  124 cct 126  Q
    |||    
T  12829066 cct 12829064  T

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