View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10268_low_6 (Length: 317)

Name: NF10268_low_6

Description: NF10268

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10268_low_6

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 108; E-Value: 3e-54

Query Start/End: Original strand, 12 - 198

Target Start/End: Original strand, 46874131 - 46874344

Alignment:

Q	12	gatgaagaagatgagaatgagagtgaggattagtgagagtgaaatggttttcaaagccatt-------------------ttgatctattattgtcccaa	92	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46874131	gatgaagaagatgagaatgagagtgaggattagtgagagtgaaatggttttcaaagccattattgcaatgataatagtgtttgatctattattgtcccaa	46874230	T

Q	93	tgagttatgttgtgttgttga----------tactagctaactaactctaactacaattgcagaagaggactgtgatgtgaatatgtgccccatctcctt	182	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46874231	tgagttatgttgtgttgttgaatgttgttgatactagctaactaact--aactacaattgcagaagaggactgtgatgtgaatatgtgccccatctcctt	46874328	T

Q	183	tccgcgttctttccca	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46874329	tccgcgttctttccca	46874344	T

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Target: chr7; HSP #2

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 239 - 301

Target Start/End: Original strand, 46874359 - 46874421

Alignment:

Q	239	tataaacttttgaagttatttcattttctcaatctcaaggattcttgctaattgtgtaagaaa	301	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46874359	tataaacttttcaagtaatttcattttctcaatctcaaggattcttgctaattgtgtaagaaa	46874421	T

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