View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_high_10 (Length: 301)
Name: NF10269_high_10
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 31935422 - 31935698
Alignment:
| Q |
1 |
ttgtgacaaatttatgttataccaaaaggtgtcattaacaacttgtttaaccaataacctttgataggggtgaaattgagttaaaaccttgattaaagag |
100 |
Q |
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| T |
31935422 |
ttgtgacaaatttatgttataccaaaagatgtcattaacaacttgtttaaccaataacctttgataggggtgaaattgagttaaaaccttgattaaagag |
31935521 |
T |
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| Q |
101 |
tgaaaagttttgcttttcccttnnnnnnnnnnnnnnnngtgaaaagttttgcttttagttttcttgagtgaaaagttttatttaccttggagaagaagaa |
200 |
Q |
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| T |
31935522 |
tgaaaagttttgcttttcccttcaaaaaaaaa------gtgaaaagttttgcttttagttttcttgagcgaaaagttttatttaccttggagaagaagaa |
31935615 |
T |
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| Q |
201 |
ggacaaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagattt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31935616 |
ggacaaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagattt |
31935698 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 27975359 - 27975412
Alignment:
| Q |
224 |
atccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctata |
277 |
Q |
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||||||||||||||||||||||||||||| |||||||||| | || |||||||| |
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| T |
27975359 |
atccgcagcagtacaagtaaaagtactcgaagcatcatcataagcgtagctata |
27975412 |
T |
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