View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10269_high_12 (Length: 256)

Name: NF10269_high_12
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10269_high_12
NF10269_high_12
[»] chr4 (2 HSPs)
chr4 (1-242)||(48430853-48431098)
chr4 (181-239)||(38648636-38648694)
[»] chr3 (4 HSPs)
chr3 (82-230)||(53287786-53287930)
chr3 (83-164)||(52545659-52545740)
chr3 (181-230)||(52805590-52805639)
chr3 (9-45)||(52806042-52806078)
[»] chr6 (9 HSPs)
chr6 (82-230)||(11841883-11842027)
chr6 (130-220)||(34114493-34114579)
chr6 (182-220)||(34135862-34135900)
chr6 (182-220)||(34138860-34138898)
chr6 (188-230)||(34168325-34168367)
chr6 (184-216)||(34091888-34091920)
chr6 (184-230)||(34106729-34106775)
chr6 (182-220)||(34130235-34130272)
chr6 (188-220)||(34922568-34922600)
[»] chr1 (8 HSPs)
chr1 (121-231)||(23627338-23627444)
chr1 (185-239)||(23617695-23617749)
chr1 (185-239)||(23649036-23649090)
chr1 (185-239)||(23734666-23734720)
chr1 (185-239)||(23741858-23741912)
chr1 (181-218)||(23617991-23618028)
chr1 (181-218)||(23649333-23649370)
chr1 (181-218)||(23734960-23734997)
[»] scaffold0620 (1 HSPs)
scaffold0620 (184-216)||(7222-7254)
[»] chr2 (4 HSPs)
chr2 (187-230)||(8144014-8144057)
chr2 (187-230)||(8150292-8150335)
chr2 (187-230)||(8154916-8154959)
chr2 (187-230)||(8176674-8176717)
[»] scaffold1113 (1 HSPs)
scaffold1113 (182-230)||(1838-1886)
[»] scaffold0961 (1 HSPs)
scaffold0961 (182-230)||(1731-1779)
[»] chr8 (1 HSPs)
chr8 (196-228)||(4524944-4524976)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48431098 - 48430853
Alignment:
Q  1 ccccagaagcctcttccttattattggtacggctatgagagggctttttccggtcattcaacttctaaatctggccatttgagggctaaatcttcaactt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  48431098 cccccgaagcctcttccttattattggtacggctatgagagggctttttccggtcattcaactgctaagtctggccatttgagggctaaatcttcaactt 48430999  T
Q  101 tgactaacaacccacgtgatcaagaaaccgagg----caagtttttcagcaaatgttaacaaagtttacgggatagggcatttggcaatgcttttgattc 196  Q
    ||||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48430998 tgactaacaacccacatgatcaagaaaccgaggcaagcaagtttttcagcaaatgttaacaaagtttacgggatagggcatttggcaatgcttttgattc 48430899  T
Q  197 aagtttcacaattttagtttctttatgcatatttttattctttgat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48430898 aagtttcacaattttagtttctttatgcatatttttattctttgat 48430853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 38648694 - 38648636
Alignment:
Q  181 gcaatgcttttgattcaagtttcacaattttagtttctttatgcatatttttattcttt 239  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||  |||||||    
T  38648694 gcaatgcttttgattcaagtttcacaattttagtttctttgttcatatttgaattcttt 38648636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 53287786 - 53287930
Alignment:
Q  82 agggctaaatcttcaactttgactaacaacccacgtgatcaagaaaccgaggcaagttttt-cagcaaatgttaacaaagtttacgggatagggcatttg 180  Q
    |||| |||||||||| |||  ||  |||||| || ||||||||||||| |||||||||||| | |||||||||| ||||||||| |||     ||  ||     
T  53287786 agggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggg-----gccgtta 53287880  T
Q  181 gcaatgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  53287881 gcaatgcttttgattctagtttcacaattctcgtttctttgtgcatattt 53287930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 52545659 - 52545740
Alignment:
Q  83 gggctaaatcttcaactttgactaacaacccacgtgatcaagaaaccgaggcaagtttttcagcaaatgttaacaaagttta 164  Q
    |||||||||||||||| |  |||  ||||| ||||||| |||||||| | ||||||||||  ||| ||||||||||||||||    
T  52545659 gggctaaatcttcaacgtaaactgtcaacctacgtgattaagaaacccaagcaagtttttttgcatatgttaacaaagttta 52545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 52805639 - 52805590
Alignment:
Q  181 gcaatgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||||||||||||| ||||| | |||||||  ||||||||||    
T  52805639 gcaatgcttttgattcaagttttacaatataagtttctcgatgcatattt 52805590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 52806078 - 52806042
Alignment:
Q  9 gcctcttccttattattggtacggctatgagagggct 45  Q
    |||||||||||||||||||| |||||||| |||||||    
T  52806078 gcctcttccttattattggtccggctatgtgagggct 52806042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 11842027 - 11841883
Alignment:
Q  82 agggctaaatcttcaactttgactaacaacccacgtgatcaagaaaccgaggcaagttttt-cagcaaatgttaacaaagtttacgggatagggcatttg 180  Q
    |||| |||||||||| |||  ||  |||||| || ||||||||||||| |||||||||||| | |||||||||| ||| ||||| |||     ||  ||     
T  11842027 agggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaatgtttatggg-----gccgtta 11841933  T
Q  181 gcaatgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  11841932 gcaatgcttttgattctagtttcacaattctcgtttctttgtgcatattt 11841883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 34114493 - 34114579
Alignment:
Q  130 gaggcaagtttttcagcaaatgttaacaaagtttacgggatagggca-tttggcaatgcttttgattcaagtttcacaattttagtttcttt 220  Q
    |||||||||||||| | ||||||||||||||||||     ||||||| ||| | |||| ||||| |||||||||||||||||||||||||||    
T  34114493 gaggcaagtttttctggaaatgttaacaaagttta-----tagggcactttagtaatgtttttgtttcaagtttcacaattttagtttcttt 34114579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 34135900 - 34135862
Alignment:
Q  182 caatgcttttgattcaagtttcacaattttagtttcttt 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34135900 caatgcttttgattcaagtttcacaattttagtttcttt 34135862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 34138898 - 34138860
Alignment:
Q  182 caatgcttttgattcaagtttcacaattttagtttcttt 220  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  34138898 caatgcttttgattcaagtttcacagttttagtttcttt 34138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 34168325 - 34168367
Alignment:
Q  188 ttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  34168325 ttttgattcaagtttcacaattttagtttctttgttcatattt 34168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 34091888 - 34091920
Alignment:
Q  184 atgcttttgattcaagtttcacaattttagttt 216  Q
    |||||||||||||||||||||||||||||||||    
T  34091888 atgcttttgattcaagtttcacaattttagttt 34091920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 34106729 - 34106775
Alignment:
Q  184 atgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    ||||||||||||||||||||| |||||||||||| || | |||||||    
T  34106729 atgcttttgattcaagtttcagaattttagtttccttgttcatattt 34106775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 34130272 - 34130235
Alignment:
Q  182 caatgcttttgattcaagtttcacaattttagtttcttt 220  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34130272 caatgcttttgattcaagtttcacaa-tttagtttcttt 34130235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 34922600 - 34922568
Alignment:
Q  188 ttttgattcaagtttcacaattttagtttcttt 220  Q
    |||| ||||||||||||||||||||||||||||    
T  34922600 tttttattcaagtttcacaattttagtttcttt 34922568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 23627338 - 23627444
Alignment:
Q  121 caagaaaccgaggcaagttttt-cagcaaatgttaacaaagtttacgggatagggcatttggcaatgcttttgattcaagtttcacaattttagtttctt 219  Q
    ||||||||| |||||||||||| | |||||||||| ||||||||| ||||     | ||| |||||||||||||||||||  |||||||| | |||||||    
T  23627338 caagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggga-----cctttagcaatgcttttgattcaagcatcacaattattgtttctt 23627432  T
Q  220 tatgcatatttt 231  Q
    | ||||||||||    
T  23627433 tctgcatatttt 23627444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 23617749 - 23617695
Alignment:
Q  185 tgcttttgattcaagtttcacaattttagtttctttatgcatatttttattcttt 239  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||  |||||||    
T  23617749 tgcttttgattcaagtttctcaattttagtttctatatgcatatttgaattcttt 23617695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 23649090 - 23649036
Alignment:
Q  185 tgcttttgattcaagtttcacaattttagtttctttatgcatatttttattcttt 239  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||  |||||||    
T  23649090 tgcttttgattcaagtttctcaattttagtttctatatgcatatttgaattcttt 23649036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 23734720 - 23734666
Alignment:
Q  185 tgcttttgattcaagtttcacaattttagtttctttatgcatatttttattcttt 239  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||  |||||||    
T  23734720 tgcttttgatttaagtttctcaattttagtttctaaatgcatatttgaattcttt 23734666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 23741912 - 23741858
Alignment:
Q  185 tgcttttgattcaagtttcacaattttagtttctttatgcatatttttattcttt 239  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||  |||||||    
T  23741912 tgcttttgatttaagtttctcaattttagtttctaaatgcatatttgaattcttt 23741858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 23618028 - 23617991
Alignment:
Q  181 gcaatgcttttgattcaagtttcacaattttagtttct 218  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  23618028 gcaatgcttttgattcaagtttcgcaattatagtttct 23617991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 23649370 - 23649333
Alignment:
Q  181 gcaatgcttttgattcaagtttcacaattttagtttct 218  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  23649370 gcaatgcttttgattcaagtttctcaattatagtttct 23649333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 23734997 - 23734960
Alignment:
Q  181 gcaatgcttttgattcaagtttcacaattttagtttct 218  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  23734997 gcaatgcttttgattcaagtttcgcaattatagtttct 23734960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 7222 - 7254
Alignment:
Q  184 atgcttttgattcaagtttcacaattttagttt 216  Q
    |||||||||||||||||||||||||||||||||    
T  7222 atgcttttgattcaagtttcacaattttagttt 7254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 8144014 - 8144057
Alignment:
Q  187 cttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  8144014 cttttgattcaaatttcacaattttagtttctttctacatattt 8144057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 8150292 - 8150335
Alignment:
Q  187 cttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  8150292 cttttgattcaaatttcacaattttagtttctttttacatattt 8150335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 8154916 - 8154959
Alignment:
Q  187 cttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  8154916 cttttgattcaaatttcacaattttagtttctttttacatattt 8154959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 8176674 - 8176717
Alignment:
Q  187 cttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  8176674 cttttgattcaaatttcacaattttagtttctttctacatattt 8176717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 1886 - 1838
Alignment:
Q  182 caatgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    ||||| ||||||||||||||| ||| ||||||||||||| | |||||||    
T  1886 caatgattttgattcaagttttacagttttagtttctttgttcatattt 1838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 1731 - 1779
Alignment:
Q  182 caatgcttttgattcaagtttcacaattttagtttctttatgcatattt 230  Q
    ||||| ||||||||||||||| ||| ||||||||||||| | |||||||    
T  1731 caatgattttgattcaagttttacagttttagtttctttgttcatattt 1779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 4524976 - 4524944
Alignment:
Q  196 caagtttcacaattttagtttctttatgcatat 228  Q
    |||||||||||| ||||||||||||||||||||    
T  4524976 caagtttcacaaatttagtttctttatgcatat 4524944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University