View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_high_13 (Length: 256)
Name: NF10269_high_13
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_high_13 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 52564700 - 52564446
Alignment:
| Q |
2 |
cataaacattgttacgaatgatttttgaaatggtccaatcgaaagcacctttgctaccgataacctttcaagcttgactcatgtcgcttcttctcccttt |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52564700 |
cataaatattgttacgaatgatttttgaaatggtccaatcgaaagcacctttcctaccgataacctttcaagcttgactcatgtcgcttcttctcccttt |
52564601 |
T |
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| Q |
102 |
ctgaactgagtcaactcaccaccaaacagttctgcggtgttttagtttgttcaatcaaatccaaacccaacaaatcttcttctcaaaaatcatcgaacac |
201 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52564600 |
ctgaactgagtcaactcaccaccaaacagttctgccatgttttagtttgttcaatcaaatccaaacccaacaaatcttcttctcaaaaatcatcgaacac |
52564501 |
T |
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| Q |
202 |
cttcctaccacaacaaatcttcttcttcctccctctccaaaaaccaatccgccct |
256 |
Q |
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| T |
52564500 |
cttcctaccacaacaaatcttcttcttcctccctctccaaaaaccaatccgccct |
52564446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 33881924 - 33882178
Alignment:
| Q |
2 |
cataaacattgttacgaatgatttttgaaatggtccaatcgaaagcacctttgctaccgataacctttcaagcttgactcatgtcgcttcttctcccttt |
101 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33881924 |
cataaacattgttacgaatgattttggaaatggtctaatcgaaagcacctttgctaccgataacctttcaagcttgactcatgccgcttcttctcccttt |
33882023 |
T |
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| Q |
102 |
ctgaactgagtcaactcaccaccaaacagttctgcggtgttttagtttgttcaatcaaatccaaacccaacaaatcttcttctcaaaaatcatcgaacac |
201 |
Q |
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| T |
33882024 |
ctaaactgagtcaactcaccaccaaacagttctgccatgttttagtttgttcaatcaaatccaaacccaacaaatcttcttctcaaaaatcatcgaacac |
33882123 |
T |
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| Q |
202 |
cttcctaccacaacaaatcttcttcttcctccctctccaaaaaccaatccgccct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33882124 |
cttcctaccacaacaaatcttcttcttcctccctctccaaaaaccaatccaccct |
33882178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 1016576 - 1016629
Alignment:
| Q |
5 |
aaacattgttacgaatgatttttgaaatggtccaatcgaaagcacctttgctac |
58 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
1016576 |
aaacattgttacgaatgattttggaaacggtccaatcgaaagcacctttgctac |
1016629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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