View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_high_2 (Length: 582)
Name: NF10269_high_2
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 3664045 - 3664609
Alignment:
| Q |
1 |
aaaaccttgaaattttcaaaacaaccttgtttatttttccgacatagatcggaaaatttcaaaaccttaatttttccgaagatgatgcacatgacattat |
100 |
Q |
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| T |
3664045 |
aaaaccttgaaattttcaaaacaaccttgtttatttttccgacatagatcggaaaatttcaaaaccttaatttttccgaagatgatgcacatgacattat |
3664144 |
T |
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| Q |
101 |
attggggaaaaaacgtgacactattgtttgattcatggaaaaccaattcatggacgagttatctattgagtttaatagcgtgcttcatgattgcaacatt |
200 |
Q |
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| T |
3664145 |
attggggaaaaaacgtgacactattatttgattcatggaaaaccaattcatggacgagttatctactgagtttaatagcgtgcttcattattgcaacatt |
3664244 |
T |
|
| Q |
201 |
ctaccaatatctggaaaatcttcggattcggttgaagtttttctccggtgaagggagaataactccggtgccggagattcggactcctcttcttgggttg |
300 |
Q |
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| T |
3664245 |
ctaccaatatctggaaaatcttcggattcggttgaagtttttctccggtgaagggagaacaactccggtgccggagattcggactcctcttcttggattg |
3664344 |
T |
|
| Q |
301 |
aataaggtttcgaggaacaaggttgttgagtcggttttatttggtgtgaattcggctatcgggtatttgttgatgttggctataatgtcgtttaatggtg |
400 |
Q |
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| T |
3664345 |
aataaggtttcgaggaacaaggttgttgagtcggttttatttggtgtgaattcggctatcgggtatttgttgatgttggctataatgtcgtttaatggtg |
3664444 |
T |
|
| Q |
401 |
gtgnnnnnnnggctatcgtggtcggattaacgtttggttacttcttgtttaggagtcagggtgaagaagaggctgcggttgttgttgataattcttgtgc |
500 |
Q |
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| T |
3664445 |
gtgtttttttggctatcgtggtcggattaacgtttggttacttcttgtttaggagtcagggtgacgaagaggctgcggttgttgttgataattcttgtgc |
3664544 |
T |
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| Q |
501 |
atgtgcttagtttgtgtgttttttgtggttgaaattcatttgttgtaatgat-acttgtgaattg |
564 |
Q |
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| T |
3664545 |
atgtgcttagtttgtgtgttttttgtggttgaaattcatttgttgtaatgatcacttgtgaattg |
3664609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 48558240 - 48558155
Alignment:
| Q |
77 |
cgaagatgatgcacatgacattatattggggaaaaaacgtgacactattgtttgattcatggaaaaccaattcatggacgagttat |
162 |
Q |
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| T |
48558240 |
cgaagatgatgcacatgactttctactggagcaaaaaagtgacactccttttcgattcatggaaaaccgattcatggacgagttat |
48558155 |
T |
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