View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_high_6 (Length: 425)
Name: NF10269_high_6
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 39307125 - 39307543
Alignment:
| Q |
1 |
tcacctaaggcagcagtgaagaagtcaacaatttgtgtctctgattgatcatagtgtttgtattgaaaagtaaatgtctctttccgtggcaaactagcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39307125 |
tcacctaaggcagcagtgaagaagtcaacaatttgtgtctctgattgatcatagtgtttgtattgaaaagtaaatgtctctttccatggcaaactagcag |
39307224 |
T |
|
| Q |
101 |
agtaccttgctgcatgagcacctgaataaccccatggatttctcattgcattgagcttcctatccaaaggaagtttgaaaagggacacaaattcttgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307225 |
agtaccttgctgcatgagcacctgaataaccccatggatttctcattgcattgagcttcctatccaaaggaagtttgaaaagggacacaaattcttgata |
39307324 |
T |
|
| Q |
201 |
agtagcatctatcaaattttggtcaactccatgattggtgacttggaaaaacccatgctccatgcatgtctccctcacaatctttgcagcagcagccaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307325 |
agtagcatctatcaaattttggtcaactccatgattggtgacttggaaaaacccatgctccatgcatgtctccctcacaatctttgcagcagcagccaaa |
39307424 |
T |
|
| Q |
301 |
gcagcagcttcaccgttgaatatggcttctaaatcaatgacaggtacattcaactcttctttgctggtttcaaccaaatcctcggatgaccagataaact |
400 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307425 |
gcagcatcatcaccgttgaatatggcttctaaatcaatgacaggtacattcaactcttctttgctggtttcaaccaaatcctcggatgaccagataaact |
39307524 |
T |
|
| Q |
401 |
cttgtggcacctatgcttc |
419 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
39307525 |
cttgtggcacctttgcttc |
39307543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University