View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_high_8 (Length: 376)
Name: NF10269_high_8
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 3462451 - 3462100
Alignment:
| Q |
18 |
atatgaagaggataagagcatccacgatcgagatattcgttttttagatatatagcttgatcacacaagtatctaacttgtttactctcgttgtttttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3462451 |
atatgaagaggataagagcatccacgatagagatattcatttttgagatatatagcttgatcacacaagtatctaacttgtttactctcgttgtttttta |
3462352 |
T |
|
| Q |
118 |
ggaaaacaataaaatattccaacaataacttcatctcaatgtttgttctacaatacaaataattcttccaagaataaacaagagttgagtacacaatgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3462351 |
ggaaaacaataaaatattccaacaataacttcatctcagtgtttgttctacaatacaaataattcttccaagaataaacaagagttgagtacacaatgga |
3462252 |
T |
|
| Q |
218 |
gtgaataggattatctgtaatctatacaaaatcaaaaaagagaaaacgtataggtattgaaatttaattaaggggacaaaaattatggttgtatgcatgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3462251 |
gtgaataggattatctgtaatctatacaaaatcaaaaaagagaaaacgtataggtattgaaatttaattaaggggacaaaaattatggttgtatgcatgt |
3462152 |
T |
|
| Q |
318 |
ttctaattcctataatggaactcttcatgattacaagcttaagagacctatg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3462151 |
ttctaattcctataatggaactcttcatgattacaagcttaagagacctatg |
3462100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University