View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_low_11 (Length: 370)
Name: NF10269_low_11
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_11 |
 | |
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| [»] scaffold0032 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 22862408 - 22862763
Alignment:
| Q |
1 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggatgttttgtagttggtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
22862408 |
gatgacgtggtagaagtgggtaagtctataggtgtacggtgtaaaaataattttcaggcactatctagaggaagtgtgcgtggaggtttcgtagttggtg |
22862507 |
T |
|
| Q |
101 |
aggaggcgagggggatggaggtgaggaaggagacagaggattaggacgtgtggggtcggtgtggagtgttttggcgtgggagttagttatgaagattatt |
200 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||| |||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| || |
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|
| T |
22862508 |
gggaggggagggggttggaggtgaggaagatgacggaggtttagggtgtgtggggtcggtgtggggtgttttggtgtgggagttagttatgaagattgtt |
22862607 |
T |
|
| Q |
201 |
tcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgtattcaagagtcga |
300 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
22862608 |
tctttaaatattaggggtctaggggcggttgagaagaggagggagattcggaggttggtgttagagagaaaatcggcggtgttatgtattcaagagtcga |
22862707 |
T |
|
| Q |
301 |
agttggaggtggtggatgagtttttgtgtcactccttatggggggctgatttgatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22862708 |
agttggaggtggtggatgagtttttgtgtcgctccttatggggggctgatttgatg |
22862763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 47556850 - 47556495
Alignment:
| Q |
1 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggatgttttgtagttggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |
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|
| T |
47556850 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggaggtttcgtagatggtg |
47556751 |
T |
|
| Q |
101 |
aggaggcgagggggatggaggtgaggaaggagacagaggattaggacgtgtggggtcggtgtggagtgttttggcgtgggagttagttatgaagattatt |
200 |
Q |
| |
|
|||||||||| || | ||||||||||||| |||||||| ||||| |||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |
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|
| T |
47556750 |
gggaggcgaggtggttagaggtgaggaaggtgacagaggtttagggtgtgtggggctggtgtggggtgttttggtgtgggaggaagttatgaagattatt |
47556651 |
T |
|
| Q |
201 |
tcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgtattcaagagtcga |
300 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
47556650 |
tctttaaatattaggggcttaggggcggttgagaagaggagggagattcggaggttggtgtcagagagaaaaccggcggtgttatgtattcaagagtcga |
47556551 |
T |
|
| Q |
301 |
agttggaggtggtggatgagtttttgtgtcactccttatggggggctgatttgatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
47556550 |
agttggaggtggtggatgagtttttgtgtcgttccttatggggggctgatttgatg |
47556495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 18814477 - 18814617
Alignment:
| Q |
189 |
atgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgta |
288 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| ||||| |||| |||| |||||| ||||||| ||||||||| |||||| | | ||| ||||||| |||| |
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|
| T |
18814477 |
atgaagattctttctgttaatatcagggggttagggacggtggagatgaggagagagattcagaggttggtttcagagaggaggtcgtcggtgttgtgta |
18814576 |
T |
|
| Q |
289 |
ttcaagagtcgaagttggaggtggtggatgagtttttgtgt |
329 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||| |||| |
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|
| T |
18814577 |
ttcaagaaactaagttgggggtggtggatgagttttcgtgt |
18814617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 591394 - 591343
Alignment:
| Q |
279 |
gtgttatgtattcaagagtcgaagttggaggtggtggatgagtttttgtgtc |
330 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
591394 |
gtgttatgtctacaagaaacgaagttggaggtggttgatgagtttttgtgtc |
591343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 10798342 - 10798697
Alignment:
| Q |
1 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggatgttttgtagttggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
10798342 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggaggtttcgtagatggtg |
10798441 |
T |
|
| Q |
101 |
aggaggcgagggggatggaggtgaggaaggagacagaggattaggacgtgtggggtcggtgtggagtgttttggcgtgggagttagttatgaagattatt |
200 |
Q |
| |
|
|||||||||| || | ||||||||||||| ||| |||| ||||| |||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10798442 |
gggaggcgaggaggttagaggtgaggaaggtgacggaggtttagggtgtgtggggctggtgtggggtgttttggtgtgggaggaagttatgaagattatt |
10798541 |
T |
|
| Q |
201 |
tcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgtattcaagagtcga |
300 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10798542 |
tctttaaatattaggggtttaggggcggttgagaagaggagggagattcggaggttggtgtcagagagaaaaccggcggtgttatgtattcaagagtcga |
10798641 |
T |
|
| Q |
301 |
agttggaggtggtggatgagtttttgtgtcactccttatggggggctgatttgatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10798642 |
agttggaggtggtggatgagtttttgtgtcgttccttatggggggctgatttgatg |
10798697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 5388186 - 5388529
Alignment:
| Q |
1 |
gatgacgtggtagaagtgggtaagtctatcggtgtacggtgtaaaaatagttttcaggcactatctagaggaagtgtgcgtggatgttttgtagttggtg |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| |
|
|
| T |
5388186 |
gatgacgtggtagaagtggcaaagtcgatcggtgtacggtgtaataatagttttcaggcactatctagaggaagtgtgcgtggagggtgtgttgttggtg |
5388285 |
T |
|
| Q |
101 |
aggaggcgagggggatggaggtgaggaaggagacagaggattaggacgtgtggggtcggtgtggagtgttttggcgtgggagttagttatgaagattatt |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
5388286 |
gggaggcgagggggttggaggtaaggaaggagacggaggtttagggtgtgtggggtcggtgtggagtattttggtgtgggagtttgttatgaagattatt |
5388385 |
T |
|
| Q |
201 |
tcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgtattcaagagtcga |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
5388386 |
tcttttaatattaggggtctaggggcggttgagaagaggagggagatccggaggttggtgtcagagagaaaaccggcggtgttatctattcaagagtcga |
5388485 |
T |
|
| Q |
301 |
agttggaggtggtggatgagtttttgtgtcactccttatggggg |
344 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5388486 |
agttggcggtggtggatgagtttttgtgtcgttccttatggggg |
5388529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 17823629 - 17823772
Alignment:
| Q |
187 |
ttatgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatg |
286 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||| |||||||| || ||| | || || | |||||||| |
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|
| T |
17823629 |
ttatgaagatattatcttttaatattagggggttaggggcgccagagaagaggagggagattaataggttggtttctgagaggaagccgacagtgttatg |
17823728 |
T |
|
| Q |
287 |
tattcaagagtcgaagttggaggtggtggatgagtttttgtgtc |
330 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17823729 |
tatacaagaatcgaagttggaggtggttgatgaatttttgtgtc |
17823772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 49828 - 49971
Alignment:
| Q |
187 |
ttatgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatg |
286 |
Q |
| |
|
|||||||||| | |||||||||| |||||| ||||||||| |||||||||||||||||| ||||||| || ||| | || || | ||||||| |
|
|
| T |
49828 |
ttatgaagatgttatcttttaatagtagggggctaggggcgccagagaagaggagggagattaattggttggtttctgagaggaagccgacattgttatg |
49927 |
T |
|
| Q |
287 |
tattcaagagtcgaagttggaggtggtggatgagtttttgtgtc |
330 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
49928 |
tatacaagaatcgaagttggaggtggttgatgagttcttgtgtc |
49971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 221566 - 221707
Alignment:
| Q |
189 |
atgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttggtgtcagagtgaaaatcggcggtgttatgta |
288 |
Q |
| |
|
||||||||| | ||| |||||||||| || ||||||| | |||||||||||||| |||||| ||||||| ||| | || || | |||| |||| |
|
|
| T |
221566 |
atgaagattttatctattaatattagagggttaggggcagcagagaagaggagggatgttcggaaattggtgttagaaaggaagccgatgatgttgtgta |
221665 |
T |
|
| Q |
289 |
ttcaagagtcgaagttggaggtggtggatgagtttttgtgtc |
330 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
221666 |
ttcaataatcgaagttggaggtggttgatgagttcttgtgtc |
221707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 48713345 - 48713277
Alignment:
| Q |
189 |
atgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttg |
257 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
48713345 |
atgaagatcttttcttttaatattcgtgggttaggggcagtagagaagaggagggagattaggaggttg |
48713277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 23824850 - 23824799
Alignment:
| Q |
279 |
gtgttatgtattcaagagtcgaagttggaggtggtggatgagtttttgtgtc |
330 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| || || |||||||||| |
|
|
| T |
23824850 |
gtgttatgtatacaagaatcgaagttggaggtggttgacgaatttttgtgtc |
23824799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 30189251 - 30189319
Alignment:
| Q |
189 |
atgaagattatttcttttaatattaggggcctaggggcggttgagaagaggagggagattcggaggttg |
257 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||| || ||||||||||||||| || ||||| |
|
|
| T |
30189251 |
atgaagatattttcttttaatattcgtgggttaggggcggtggaaaagaggagggagatttggcggttg |
30189319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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