View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_12 (Length: 345)
Name: NF10269_low_12
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 17088510 - 17088670
Alignment:
| Q |
1 |
tattcaggtcttgtagttctgtgttagtatcatcataaagtgctctagaaaaaattagagagttgcctcttttctttgggatggtgaacttatttttgat |
100 |
Q |
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| T |
17088510 |
tattcaggtcttgtagttctgtgttagtatcatcataaagtgctctagaaaaaattagagagttgcctcttttctttgggatggtgaacttatttttgat |
17088609 |
T |
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| Q |
101 |
tttaaattatgnnnnnnnaagtcaattaacagaatttttacctaaaattagaagactcttcc |
162 |
Q |
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| T |
17088610 |
tttaaattatgttttttaaagtcaattaacag-atttttacctaaaattaagagactcttcc |
17088670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 17088667 - 17088716
Alignment:
| Q |
206 |
ttccatggctagagcttataaatttgaaatgaagtgttcatttgtttgga |
255 |
Q |
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| T |
17088667 |
ttccatggctagagcttataaatttgaaatgaagtgttcatttgtttgga |
17088716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 17088760 - 17088801
Alignment:
| Q |
294 |
atgtttgttcggatcttaattttttgttgctggtatcctttg |
335 |
Q |
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| T |
17088760 |
atgtttgtttggatcttaattttttgttgttgatatcctttg |
17088801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 26633554 - 26633761
Alignment:
| Q |
16 |
gttctgtgttagtatcatcataaagtgctctagaaaaaattagagag--ttgcctcttttctttgggatggtgaacttatttttgattttaaattatgnn |
113 |
Q |
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| T |
26633554 |
gttctgtgctagtataatcatcaagtgctctggagaaaattagagagagttacctcttttctttgggatggtgaacttattttttattttaaattgtg-t |
26633652 |
T |
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| Q |
114 |
nnnnnaagtcaattaacagaatttttacctaaaattagaagactcttcccatccttttaaattgaaaaattaagttcatgtcatgaccagctttccatgg |
213 |
Q |
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| T |
26633653 |
tttttaggtcaagtaaatgaatttttatctcaaattaaaatattcctctgatcctcttaaattgaaaaattaagttcatgtcataaacagttttccatgg |
26633752 |
T |
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| Q |
214 |
ctagagctt |
222 |
Q |
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||| ||||| |
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| T |
26633753 |
ctatagctt |
26633761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 26739530 - 26739737
Alignment:
| Q |
16 |
gttctgtgttagtatcatcataaagtgctctagaaaaaattagagag--ttgcctcttttctttgggatggtgaacttatttttgattttaaattatgnn |
113 |
Q |
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| T |
26739530 |
gttctgtgctagtataatcatcaagtgctctggagaaaattagagagagttacctcttttctttgggatggtgaacttattttttattttaaattgtg-t |
26739628 |
T |
|
| Q |
114 |
nnnnnaagtcaattaacagaatttttacctaaaattagaagactcttcccatccttttaaattgaaaaattaagttcatgtcatgaccagctttccatgg |
213 |
Q |
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| T |
26739629 |
tttttaggtcaagtaaatgaatttttatctcaaattaaaatattcctctgatcctcttaaattgaaaaattaagttcatgtcataaacagttttccatgg |
26739728 |
T |
|
| Q |
214 |
ctagagctt |
222 |
Q |
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| T |
26739729 |
ctatagctt |
26739737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 27701720 - 27701553
Alignment:
| Q |
61 |
agttgcctcttttctttgggat--ggtgaacttatttttgattttaaattatgnnnnnnnaagtcaattaacagaatttttacctaaaattagaagactc |
158 |
Q |
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| T |
27701720 |
agttacctcttttctttgggatatggtgaacttatttttcattttaaagcgtgtttttt-aagtcaattaaatgaatttttacctcaaattaaaacattc |
27701622 |
T |
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| Q |
159 |
ttcccatccttttaaattgaaaaattaagttcatgtcatgaccagctttccatggctagagcttataaa |
227 |
Q |
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|| ||||| |||| || |||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
27701621 |
ctctgatcctcttaatttcaaaaattaagttcatgtcatgaccagttttccatggctatagcttgtaaa |
27701553 |
T |
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