View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_17 (Length: 287)
Name: NF10269_low_17
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 4537742 - 4537773
Alignment:
| Q |
50 |
aagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
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| T |
4537742 |
aagggtcctgctaaccggtgcctctggggcac |
4537773 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 34546330 - 34546362
Alignment:
| Q |
49 |
aaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
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| T |
34546330 |
aaaggatcctgctaaccggtgcctctggggcac |
34546362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 38128485 - 38128449
Alignment:
| Q |
45 |
atttaaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
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| T |
38128485 |
atttaaagggtcatgctaaccggtgcctccggggcac |
38128449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 23402331 - 23402295
Alignment:
| Q |
45 |
atttaaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
23402331 |
attttaagggtcctgctaaccggtgcctccggggcac |
23402295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 7741497 - 7741533
Alignment:
| Q |
45 |
atttaaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||| |
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|
| T |
7741497 |
attttaagggtgctgctaaccggtgcctctggggcac |
7741533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 8927553 - 8927585
Alignment:
| Q |
49 |
aaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
8927553 |
aaagggtcctgctaaccggtgcccctggggcac |
8927585 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 53163959 - 53163923
Alignment:
| Q |
45 |
atttaaagggtcctgctaaccggtgcctctggggcac |
81 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||| |
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| T |
53163959 |
atttatagggtcctgctaaccggtgcctccggggcac |
53163923 |
T |
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