View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_low_22 (Length: 250)
Name: NF10269_low_22
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 6684467 - 6684624
Alignment:
| Q |
13 |
aaggaaaaatggggtagactgagtaaaacaaaattctgcaacacaagcccaacttttgctctccaaatgaaggtcaagtccaactgtgagcaatgttgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6684467 |
aaggaaaaatggggtagactgagtaaaacaaaattctgcaacacaagcccaacttttgctctccaaatgaaggtcaagtccaactgtgagcaatgttgaa |
6684566 |
T |
|
| Q |
113 |
aatctgagatgagaaacacgtgagaacactaaacgcacttttttcttcttcccgaaat |
170 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
6684567 |
aatctgagatgagaaacacgtgagaacacaaaacacgcttttttcttcttcccgaaat |
6684624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 6684675 - 6684758
Alignment:
| Q |
167 |
aaattacaattacttctccaaaacgtgtttttgcaaggaagaacaaaaacaaaacgtgattctaccacattgctaacagcaaac |
250 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6684675 |
aaattacaattacttctccaaaacgtgattctgcaaggaagatcaaaaacaaaacctgattctaccacattgctaacagcaaac |
6684758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University