View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10269_low_23 (Length: 250)

Name: NF10269_low_23
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10269_low_23
NF10269_low_23
[»] chr5 (3 HSPs)
chr5 (1-240)||(15120361-15120597)
chr5 (118-231)||(683387-683499)
chr5 (70-138)||(683586-683657)
[»] chr1 (5 HSPs)
chr1 (118-222)||(4948951-4949054)
chr1 (118-235)||(24446841-24446957)
chr1 (125-196)||(26392957-26393027)
chr1 (160-233)||(42317341-42317414)
chr1 (118-230)||(48465957-48466067)
[»] chr2 (4 HSPs)
chr2 (118-239)||(987461-987578)
chr2 (118-173)||(30943007-30943062)
chr2 (118-196)||(23058304-23058381)
chr2 (204-233)||(14233042-14233071)
[»] chr3 (1 HSPs)
chr3 (118-238)||(8787519-8787638)
[»] chr4 (1 HSPs)
chr4 (200-239)||(181748-181787)
[»] chr6 (3 HSPs)
chr6 (125-231)||(1905971-1906076)
chr6 (62-144)||(1906157-1906242)
chr6 (174-235)||(19050480-19050541)
[»] chr8 (1 HSPs)
chr8 (174-231)||(34296041-34296098)
[»] chr7 (1 HSPs)
chr7 (120-228)||(35861661-35861767)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15120361 - 15120597
Alignment:
Q  1 caattcaattatgaattaggattaatgataatatttcagtgtatgtttggtgtcatggcgggagtaaagcaccaaattagtctctgaatgtaggtcgctc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15120361 caattcaattatgaattaggattaatgataatatttgagtgtatgtttggtgtcatggcgggagtaaagcaccaaattagtctctgaatgtaggtcgctc 15120460  T
Q  101 tcgaataggttctgactttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcact 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15120461 tcgaataggttctgactttatgaata-ttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcact 15120559  T
Q  201 ccctatattttaacaacttactgtcaatttggttcctatg 240  Q
    |||  |||||||||||||||||||||||||||||| ||||    
T  15120560 ccc--tattttaacaacttactgtcaatttggttcgtatg 15120597  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 683387 - 683499
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    |||||| ||||||||||||||| |||| | ||||||| | |||| ||| ||| || |||| ||||| ||| |||||||| | ||| |||||||||| ||     
T  683387 ttatgactatttcaaaaaggtctctgactctattaaattgtcaagttgatcctta-tatttaaccacttattatcaattaagtccttatattttaataat 683485  T
Q  218 ttactgtcaatttg 231  Q
    ||||| ||||||||    
T  683486 ttactatcaatttg 683499  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 683657 - 683586
Alignment:
Q  70 caccaaattagtctctgaat--gtaggtcgctctcgaataggtt-ctgactttatgaatatttcaaaaaggt 138  Q
    ||||||||||||| |||| |  ||||| ||||||| |||||||| ||||| || ||||||||||||||||||    
T  683657 caccaaattagtccctgactttgtagggcgctctcaaataggtttctgacgttctgaatatttcaaaaaggt 683586  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 4948951 - 4949054
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    ||||||||||||||||| ||||||||| | ||||||||| ||||| | |||| || |||| || || ||||||||||||   |||||||||||||||||     
T  4948951 ttatgaatatttcaaaacggtccctgagtctattaaactgtcaaagttgtccata-tatttaatcacttactatcaattaggtccctatattttaacaat 4949049  T
Q  218 ttact 222  Q
    |||||    
T  4949050 ttact 4949054  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 24446957 - 24446841
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    ||||||||||||||| ||||||| ||| | ||||||| | || ||||| |||||| |||| ||||| | ||||||||||   || || ||||||||  ||    
T  24446957 ttatgaatatttcaagaaggtccttgactctattaaattgtcgaattgatcccta-tatttaaccactcactatcaattatgtctctgtattttaatcac 24446859  T
Q  218 ttactgtcaatttggttc 235  Q
    ||||| ||||||||||||    
T  24446858 ttactatcaatttggttc 24446841  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 26392957 - 26393027
Alignment:
Q  125 tatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaatt 196  Q
    ||||| ||||||||||  || | ||||||||| |||| |||||||||| |||| ||||||||||||||||||    
T  26392957 tattttaaaaaggtcctcgactctattaaactgtcaagttggtcccta-tatttaaccatttactatcaatt 26393027  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 42317341 - 42317414
Alignment:
Q  160 aaattggtccctattattaaaccatttactatcaattcactccctatattttaacaacttactgtcaatttggt 233  Q
    |||||||||  ||||||||||| | |||| ||||||||| | |  ||||||||||||| ||| |||||||||||    
T  42317341 aaattggtctttattattaaacaacttacaatcaattcagtactcatattttaacaacataccgtcaatttggt 42317414  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 48465957 - 48466067
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    ||||||||||||||||||| ||||| | | ||||||||| |||  |||||||| ||  |||||| | ||||| | ||||   ||| ||||||||||||||    
T  48465957 ttatgaatatttcaaaaag-tcccttactctattaaactgtcagcttggtcccaatatttaaac-acttactgttaattagatccatatattttaacaac 48466054  T
Q  218 ttactgtcaattt 230  Q
    ||||| |||||||    
T  48466055 ttactatcaattt 48466067  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 987578 - 987461
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    |||||||||||||||||||||||| || |  |||||| | |||| |||||||| |  ||| ||||| ||||||||||||   ||||||||||||||||||    
T  987578 ttatgaatatttcaaaaaggtccccgact--attaaattgtcaacttggtccccaa-atttaaccacttactatcaattaggtccctatattttaacaac 987482  T
Q  218 ttactgtcaatttggttcctat 239  Q
    ||| | |||||||||| |||||    
T  987481 ttagt-tcaatttggtccctat 987461  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 30943007 - 30943062
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctat 173  Q
    |||||||||||||| |||| ||||||| | ||||||| | ||||||||||||||||    
T  30943007 ttatgaatatttcataaagctccctgactctattaaattgtcaaattggtccctat 30943062  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 23058304 - 23058381
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaatt 196  Q
    ||||||||||||| ||||||||||| | | |||||| || | || |||||||||| |||| ||||| ||||||||||||    
T  23058304 ttatgaatatttctaaaaggtccctcattctattaatctgttaagttggtcccta-tatttaaccacttactatcaatt 23058381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 14233071 - 14233042
Alignment:
Q  204 tatattttaacaacttactgtcaatttggt 233  Q
    ||||||||||||||||||||||||||||||    
T  14233071 tatattttaacaacttactgtcaatttggt 14233042  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 8787638 - 8787519
Alignment:
Q  118 ttatgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaac 217  Q
    |||||||||||||||||||||| |||| | ||||||| | |||  || |||||||| ||| || ||  ||||||||||  | |||||||||||||||||     
T  8787638 ttatgaatatttcaaaaaggtctctgactctattaaagtgtcaggtttgtccctat-atttaatcacctactatcaatcaagtccctatattttaacaag 8787540  T
Q  218 ttactgtcaatttggttccta 238  Q
    | ||| |||||||||| ||||    
T  8787539 taactatcaatttggtcccta 8787519  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 181787 - 181748
Alignment:
Q  200 tccctatattttaacaacttactgtcaatttggttcctat 239  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  181787 tccctatattttaacaacttactatcaatttgattcctat 181748  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 1905971 - 1906076
Alignment:
Q  125 tatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaacttactgt 224  Q
    |||||| |||| |||| ||| | ||||||||| | || ||||||||||  | | ||||| ||| |||| ||| | ||| |||||||||||||||||||||    
T  1905971 tatttcgaaaaagtccatgactctattaaactattaagttggtccctac-actcaaccacttaatatcgattaagtccttatattttaacaacttactgt 1906069  T
Q  225 caatttg 231  Q
    |||||||    
T  1906070 caatttg 1906076  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 1906242 - 1906157
Alignment:
Q  62 gagtaaagcaccaaattagtctctgaat--gtaggtcgctctcgaataggttc-tgactttatgaatatttcaaaaaggtccctga 144  Q
    ||||||| || ||||||||||| ||| |  ||||||||||||| |||| || | ||||||||||||||||||||||| ||| ||||    
T  1906242 gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatacgtccctgactttatgaatatttcaaaaaagtctctga 1906157  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 19050541 - 19050480
Alignment:
Q  174 tattaaaccatttactatcaattcactccctatattttaacaacttactgtcaatttggttc 235  Q
    |||| ||||| |||||||||||    |||| |||||||||||| ||||||||||||||||||    
T  19050541 tatttaaccacttactatcaatcaggtccccatattttaacaatttactgtcaatttggttc 19050480  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 34296041 - 34296098
Alignment:
Q  174 tattaaaccatttactatcaattcactccctatattttaacaacttactgtcaatttg 231  Q
    |||||||||| || |||||||||   || |||||||||||||||||||| ||||||||    
T  34296041 tattaaaccacttgctatcaattatgtcactatattttaacaacttactatcaatttg 34296098  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 35861767 - 35861661
Alignment:
Q  120 atgaatatttcaaaaaggtccctgaatttattaaactctcaaattggtccctattattaaaccatttactatcaattcactccctatattttaacaactt 219  Q
    |||| |||||||||||||||| ||| | ||||||| |  ||| ||||| | ||| ||| ||||| | |||||||||| | ||| ||||||||||||||||    
T  35861767 atgagtatttcaaaaaggtccttgactctattaaagtggcaagttggttcatat-attcaaccactcactatcaattaagtcc-tatattttaacaactt 35861670  T
Q  220 actgtcaat 228  Q
    ||| |||||    
T  35861669 actatcaat 35861661  T

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