View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_27 (Length: 234)
Name: NF10269_low_27
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 46170238 - 46170017
Alignment:
| Q |
14 |
agatactagagaaaacaaaccaataaagaactagagaagggtagacaaatgagagttacaggatccaagtccatgctaaaaatttggagcatctaccttt |
113 |
Q |
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| T |
46170238 |
agatactagagaaaacaaaccaataaagaactagagaagggtagacaaatgagagttacaggacccaagtccatgctaaaaatttggagcatctaccttt |
46170139 |
T |
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| Q |
114 |
taggcaaagaaatatagtgatcgtagacaaaatttggataaaattaaagagaagttaatgtttgaaatggaggggaaacatgggataaagcaaaaat--g |
211 |
Q |
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| T |
46170138 |
taggcaaagaaatatagtgatcgtagacaaaatttggataaaataaaagagaa-ttaatgtttgaaatggaggggaaacatgggataaagcaaaaatgag |
46170040 |
T |
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| Q |
212 |
agagatgaattatagttacagta |
234 |
Q |
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| T |
46170039 |
agagatgaattatagttacagta |
46170017 |
T |
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