View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_low_29 (Length: 227)
Name: NF10269_low_29
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_29 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31935208 - 31935434
Alignment:
| Q |
1 |
aataccaaagagtgaatattcttaaaaaatattccgcaataaaaataacaaccacgtcatattaatttttagcctaaggataacaaccattaagactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31935208 |
aataccaaagagtgaatattcttaaaaaatattccgcaataaaaataacaaccacgtcatattaatttttagcctaaggataacaaccattaagactgca |
31935307 |
T |
|
| Q |
101 |
tcgaccaccttttgaattttgatagttgtaaaatcgacttaatgcatgtttaacatcgtgattttgtaaaagatacgatccctaacttttgtaaaatcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
31935308 |
tcgaccaccttttgaattttgatagttgtaaaatcgacttaatgcatgtttaacatcgtgattttgtaaaagatacaatccctaatttttgttaaatcac |
31935407 |
T |
|
| Q |
201 |
atagtttatcgtgattgtgacaaattt |
227 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
31935408 |
ataatttatcgtgattgtgacaaattt |
31935434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University