View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_3 (Length: 517)
Name: NF10269_low_3
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 12 - 460
Target Start/End: Original strand, 28605185 - 28605649
Alignment:
| Q |
12 |
taggatctcactggtgtgtgtgt--caattttagatgtatcacgtcgtctattgagnnnnnnnnnttgaattttaaacttttataggaatcacaaacaga |
109 |
Q |
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| T |
28605185 |
taggatctcactggtgtgtgtgtgtcaatttcagatgtatcacgtcatctattgagaaaaaa---tggaattttaaacttttatagggaccacaaacaga |
28605281 |
T |
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| Q |
110 |
ttttaaacgtttatattctaaaaaagtt-gattaaacatttgcgcaacttggaaaaattaaaatttatgttcggttggttagaaattctaaaattaaatt |
208 |
Q |
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| T |
28605282 |
ttttaaacgtttatattctaaaaaaaatcgattaaacatttgcgcaacttggaaaaattaaaatttatgttcggttggttagaaattctaaaattaaatt |
28605381 |
T |
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| Q |
209 |
gtgtattttttgtggaaattaaattatgtattaaactttgaaaggaaatgcatt------tattgacttatgagttgatagatagcaattgtaccatgtg |
302 |
Q |
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| T |
28605382 |
gtgtattttttgtggaaattaaatcatgtattaaactttgaaaggaaatgcatttaatcctattgacttatgaattgatagatagcaattgtatcatgtg |
28605481 |
T |
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| Q |
303 |
tgtgtaacgtgttacataccaagaaaagt-nnnnnnnnnnttacagttgtttgaaggtgtcattgttgcacatttacaatgttaagtaggagaatatata |
401 |
Q |
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| T |
28605482 |
tgtgtaacgtgttacataccaacaaaagtaaaaaaaaaaaatacagttgtttgaaggtgtcattgttgcacatttgcaatgttaagtaggagaatatata |
28605581 |
T |
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| Q |
402 |
---------taggaaatcataattaataacaagctaaatgccacctcaaatagataaatattgttata |
460 |
Q |
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| T |
28605582 |
taggaaagctaggaaatcataactaataacaaactaaatgccacctcaaatatataaatattgttata |
28605649 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 13650034 - 13650080
Alignment:
| Q |
407 |
aatcataattaataacaagctaaatgccacctcaaatagataaatat |
453 |
Q |
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| T |
13650034 |
aatcataactaataagaagataaatgctacctcaaatagataaatat |
13650080 |
T |
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