View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_30 (Length: 225)
Name: NF10269_low_30
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 35456004 - 35455813
Alignment:
| Q |
14 |
caaaggcagctaaaataaaatagagtcccggttgcacacattgctagtatttacatcagaccacgttcaaattaagctcgagcatcatacaaggccagaa |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35456004 |
caaaggcagctaaaataaaatagagtccaggttgcacacattgctagtatttacatcagaccacgttcaaattaagctcgagcatcatacaaggccggaa |
35455905 |
T |
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| Q |
114 |
tacatcagttgtaattgtgcatcccgcccacgcttacaatcacagttatcaacagtaaattttatgttgcatcaagcttcctccaaacgcct |
205 |
Q |
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| T |
35455904 |
tacatcagttgtaattgtgcatcccgcccacgcttacaatcacagttatcaacagtaaattttatgttgcatcaagcttcctccaaacgcct |
35455813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 24517879 - 24517689
Alignment:
| Q |
14 |
caaaggcagctaaaataaaatagagtcccggttgcacacattgctagtatttacatcagaccacgttcaaattaagctcgagcatcatacaaggccagaa |
113 |
Q |
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||||| ||| |||||| ||||||||||| | |||||||||||||| ||||||||||| | ||||| |||||||| || ||||||||||||||||| || |
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| T |
24517879 |
caaagtcagttaaaatgaaatagagtcctagatgcacacattgctaatatttacatcaaatcacgtccaaattaaattcaagcatcatacaaggccaaaa |
24517780 |
T |
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| Q |
114 |
tacatc-agttgtaattgtgcatcccgcccacgcttacaatcacagttatcaac-agtaaattttatgttgcatcaagcttcctccaaacg |
202 |
Q |
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|||||| |||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
24517779 |
tacatctagttgtaattgtgcatcccgcccatgcttaccaccacagttatcaacgcgtaaattttcagttgcatcaagcttcctccaaacg |
24517689 |
T |
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