View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10269_low_31 (Length: 218)
Name: NF10269_low_31
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_31 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36675603 - 36675821
Alignment:
| Q |
1 |
ggttcctacatttgctgcaccatagtccctacaacaaccgtggaggatctgagttcagcgaggaggagaagaaaatgttaaaattgagggaaaagtaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675603 |
ggttcctacatttgctgcaccatagtccctacaacaaccgtggaggatctgagttcagcgaggaggagaagaaaatgttaaaattgagggaaaagtaaga |
36675702 |
T |
|
| Q |
101 |
gagttcatagaggagaagnnnnnnntgttaaaatcgaggg-aaaataatagagaaaaagtacaagtatgagggagatgtagaggatggagaggaaaatgg |
199 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675703 |
gagttcatagaggagaagaaaaaaatgttaaaatcaagggaaaaataatagagaaaaagtacaagtatgagggagatgtagaggatggagaggaaaatgg |
36675802 |
T |
|
| Q |
200 |
agttcatgttcactttttt |
218 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
36675803 |
agttcatgttcaatttttt |
36675821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 36695292 - 36695381
Alignment:
| Q |
13 |
tgctgcaccatagtccctacaacaaccgtggaggatctgagttcagcgaggaggagaagaaaatgttaaaattgagggaaaagtaagagag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
36695292 |
tgctgcaccatagtccctacaacaaccgtagaggatctgagttcagcgaggaggtgaa-aaaatgttaaaattgagggaaaaataaaagag |
36695381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 36695354 - 36695418
Alignment:
| Q |
126 |
tgttaaaatcgagggaaaa-taatagagaaaaagtacaagtatgagggagatgtagaggatggag |
189 |
Q |
| |
|
||||||||| ||||||||| ||| ||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
36695354 |
tgttaaaattgagggaaaaataaaagagagaaattacaagtatgagggagatgtagacgatggag |
36695418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University