View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_34 (Length: 209)
Name: NF10269_low_34
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 43999760 - 43999966
Alignment:
| Q |
3 |
ataatctccatcagccgggactgtcagcccatgaattttatctgcccaacctgtaaaaacaataattgttagactggggatattagcatgattannnnnn |
102 |
Q |
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| T |
43999760 |
ataatctccatcagccgggactgtcagcccatgaattttatctgcccaacctgtaaaaacaataattgttagactggggatattagcatgattatttttt |
43999859 |
T |
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| Q |
103 |
nnacaacaattaaaaaagcattgacataaggaacatgttgttactgatccgatcctaccagcatagtagcgaaataaacgcacaaacataggtacttcag |
202 |
Q |
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| T |
43999860 |
ttacaacaattaaaaaagcattgacataaggaacatgttgttactgatccgatcctaccagcatagtagcgaaataaacgcacaaacataggtacttcag |
43999959 |
T |
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| Q |
203 |
ctttggc |
209 |
Q |
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||||||| |
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| T |
43999960 |
ctttggc |
43999966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 39294392 - 39294286
Alignment:
| Q |
105 |
acaacaattaaaaaagcattgacataaggaacatgttgttactgat----ccgatcctaccagcatagtagcgaaataaacgcacaaacataggtacttc |
200 |
Q |
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| T |
39294392 |
acaacaatttaaaaagcattggcataaggaacatgtagtagttgttgttactgatcttaccagcataataacgaaataaacgcacaaacataggtacgtt |
39294293 |
T |
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| Q |
201 |
agctttg |
207 |
Q |
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| T |
39294292 |
agctttg |
39294286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 8357334 - 8357440
Alignment:
| Q |
105 |
acaacaattaaaaaagcattgacataaggaacatgttgttactgat----ccgatcctaccagcatagtagcgaaataaacgcacaaacataggtacttc |
200 |
Q |
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| T |
8357334 |
acaacaatttaaaaagcattggcataaggaacatgtagtagttgttgttactgatcttaccagcataataacgaaataaacgcacaaacataggtacata |
8357433 |
T |
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| Q |
201 |
agctttg |
207 |
Q |
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| T |
8357434 |
agctttg |
8357440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 26894924 - 26894878
Alignment:
| Q |
9 |
tccatcagccgggactgtcagcccatgaattttatctgcccaacctg |
55 |
Q |
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| T |
26894924 |
tccatcagctggaactgtgagcccatgaatcttatctgcccaacctg |
26894878 |
T |
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