View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_4 (Length: 502)
Name: NF10269_low_4
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 37135908 - 37136398
Alignment:
| Q |
1 |
tggagggtggggttagtcacttaataaattgaaatttgacactaattgagttatgtgggtgttattgtttgttatcaggtgggtcatttgcatacttaag |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135908 |
tggagggtggggttagtcacttaataaatttaaacttgacactaattgagttatgtgggtgttattgtttgttatcaggtgggtcatttgcatacttaag |
37136007 |
T |
|
| Q |
101 |
agtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctcgatcatggacctcctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136008 |
agtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcagccgtagctcgatcatggacctcctat |
37136107 |
T |
|
| Q |
201 |
tttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtcatcttgaccctattgctgttatagccc |
300 |
Q |
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| T |
37136108 |
tttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatcttgaccctattgctgttatagccc |
37136207 |
T |
|
| Q |
301 |
tcatagccatcgccactcttgcagtcttgagcaccagaatctcttctctcttcaacaaaattgcaactatctttcatttagttgtcattgccttcatcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37136208 |
tcatagccatcgccactcttgcagtcttgagcaccagaatctcttctctcttcaacaaaattgcaacaatctttcatttagttgtcattgccttcatcat |
37136307 |
T |
|
| Q |
401 |
cattgttggcctaatcaacgccaaccccgaaaattacgcttcatttgctccttttggtaccagaggtgtttttaaagcctcggctgttctt |
491 |
Q |
| |
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| T |
37136308 |
cattgttggcctaatcaacgccaaccccgaaaactacgcttcatttgctccttttggtaccagaggtgtttttaaagcctcggctgttctt |
37136398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 325
Target Start/End: Complemental strand, 37120271 - 37120021
Alignment:
| Q |
75 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
174 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || || || | |
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| T |
37120271 |
tcaggtgggtcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcgg |
37120172 |
T |
|
| Q |
175 |
ccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtca |
274 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||| ||||||||||| || |
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| T |
37120171 |
cggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctgattatggcca |
37120072 |
T |
|
| Q |
275 |
tcttgaccctattgctgttatagccctcatagccatcgccactcttgcagt |
325 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||| | |||||||||| |
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|
| T |
37120071 |
tcttgaccctattgctattggagccctagtagccatcacagctcttgcagt |
37120021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 75 - 290
Target Start/End: Complemental strand, 37112016 - 37111801
Alignment:
| Q |
75 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||| |||| ||| | ||||| || | |
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|
| T |
37112016 |
tcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccg |
37111917 |
T |
|
| Q |
175 |
ccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatagtccaaaatatgagccctgattatggtca |
274 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || ||||||| |||||| ||||| || |
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| T |
37111916 |
cggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggcca |
37111817 |
T |
|
| Q |
275 |
tcttgaccctattgct |
290 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
37111816 |
tcttgaccctattgct |
37111801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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