View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_5 (Length: 467)
Name: NF10269_low_5
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 3009475 - 3009049
Alignment:
| Q |
16 |
cctgtgtcacgcaaaataaaatattaatgatataattttttgtgccctgaaattttttaatgccgtttgacagagaatgcagtgacgagtatgttgtgac |
115 |
Q |
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| T |
3009475 |
cctgtgtcacgcaaaataaaatattaatgatataattttttgtgccctgaaaaatattaatgccgtttgacagagaatgcagtgaagagtatgttgtgac |
3009376 |
T |
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| Q |
116 |
actctcaagtgaagtaatttataaaataattttttgttttggagaaaatggtgttagaataaaaaattgattataagtgacaatttcttttacatggata |
215 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||| ||| |
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| T |
3009375 |
actctcaagtaaagtaatttataaaatcattttttgttttggagaaaatggtgttagaataaaaagttgattacaagtgagattttcttttacatgtata |
3009276 |
T |
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| Q |
216 |
tagaatattagagaaacataaaatgcatcctttttcacaggatggtgctaattgttttttgaatatatgcattttgatcaagtgataccctgacactcat |
315 |
Q |
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||||||||||||||| |||||| |||||| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3009275 |
tagaatattagagaagcataaagtgcatcatttttcctatgatggtgctgattgttttttgaatatatgcattttgataaagtgatacactgacactcat |
3009176 |
T |
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| Q |
316 |
agtctcatactatatacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaa |
415 |
Q |
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| T |
3009175 |
a----------ctatacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaa |
3009086 |
T |
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| Q |
416 |
atggttcttcccacgatatcctcatatcggaacgaac |
452 |
Q |
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| T |
3009085 |
atggttcttcccacgatatcctcatatcggaacgaac |
3009049 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 54725172 - 54725270
Alignment:
| Q |
330 |
tacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaaatggttcttccca |
428 |
Q |
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||||||||| ||||| || || |||||||||||| | || |||||||| || ||||| || || || ||||||||||||||||||||||| || ||||| |
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| T |
54725172 |
tacctgaagtccaaagttactagcattacaatggtggatgccttcttcaacagaattgatcctaattacaggcaaaactggtccaaatggctcctccca |
54725270 |
T |
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