View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10269_low_6 (Length: 428)
Name: NF10269_low_6
Description: NF10269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10269_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 39782492 - 39782888
Alignment:
| Q |
17 |
tgtggacctaaaaaatatcagtggcatgtgacttgtgaatagtaatgtatcagtgcacaatgtaaaatagtggtgttaatgcgtgacatatcaaacccca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39782492 |
tgtggacctaaaaaatatcagtggcatgtgacttgtgaatagtaatgtatcagtgcacaaagtaaaatagtggtgttaatgcgtgacatatcaaacccca |
39782591 |
T |
|
| Q |
117 |
ccatacttgataacaattgacacaacatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782592 |
ccatacttgataacaattgacacaacatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattga |
39782691 |
T |
|
| Q |
217 |
ccttaacatatannnnnnncttcccttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgtt |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782692 |
ccttaacatatatttttttcttcccttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgtt |
39782791 |
T |
|
| Q |
317 |
cttcaataccaaaactactgtttctgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttgttttgtttat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782792 |
cttcaataccaaaactactgtttctgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttgttttgtttat |
39782888 |
T |
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