View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026_low_2 (Length: 288)
Name: NF1026_low_2
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 49 - 201
Target Start/End: Original strand, 33178218 - 33178370
Alignment:
| Q |
49 |
atgaatatcaagcaagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaatcaattctgaggtctt |
148 |
Q |
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| T |
33178218 |
atgaatatcaagcaagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaatcaattctgaggtctt |
33178317 |
T |
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| Q |
149 |
tatcttaatatttcattcccatatgctagttaaaagtttagaaaagtagaaag |
201 |
Q |
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| T |
33178318 |
tatcttaatatttcatttccatatgctagctaaaagtttagaaaagtataaag |
33178370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 33155436 - 33155550
Alignment:
| Q |
61 |
caagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaatcaattctgaggtctttatcttaatatt |
160 |
Q |
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| T |
33155436 |
caagtctggagcagttagataacattaacccccctgccagcttcacttcaccgttgtgtactttgaagaaaatcaattctgaggtc-ttattttaatatt |
33155534 |
T |
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| Q |
161 |
tcattcccatatgcta |
176 |
Q |
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| T |
33155535 |
tcattttcatatgcta |
33155550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 33290153 - 33290059
Alignment:
| Q |
67 |
tggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaatcaattctgaggtctttatcttaatattt |
161 |
Q |
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| T |
33290153 |
tggagccattggataacacacatccccctgctagcttcactccaccgttgtgtattttgaagaaaattaattctgaggtctttattttaatattt |
33290059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 33137721 - 33137787
Alignment:
| Q |
67 |
tggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaat |
133 |
Q |
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| T |
33137721 |
tggagcacctggataatattaatccaccagctagcttcacttcaccgctgtgtactttgaagcaaat |
33137787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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