View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026_low_3 (Length: 224)
Name: NF1026_low_3
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 9082064 - 9082209
Alignment:
| Q |
2 |
aaagcataaaagaaacttagaattcgagccataattttttctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgct |
101 |
Q |
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| T |
9082064 |
aaagcataaaagaaacttaggattcgagccataattttttctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgct |
9082163 |
T |
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| Q |
102 |
ttgttaacttcaatgaaatagtttttaactctaggaggtgcaagaa |
147 |
Q |
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| T |
9082164 |
ttgttaacttcaatgaaatagtttttaaccctagaaggtgcaagaa |
9082209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 9100687 - 9100832
Alignment:
| Q |
1 |
taaagcataaaagaaacttagaattcgagccataattttttctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatgc |
100 |
Q |
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| T |
9100687 |
taaagtataaaagaaataaaggattcgagccataatttttgcgcttttgcatgtaataaatgaaaaatattttgatc--tttataaacaaaatgtaatgc |
9100784 |
T |
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| Q |
101 |
tttgttaacttcaatgaaatagtttttaa-ctctaggaggtgcaagaa |
147 |
Q |
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| T |
9100785 |
tttgtaaacttcaatgaaatagtttttaacccctaggaggtgcaagaa |
9100832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 9105085 - 9105217
Alignment:
| Q |
1 |
taaagcataaaagaaacttagaattcgagccata-----attttttctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggt |
95 |
Q |
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| T |
9105085 |
taaaccataaaagaaacatagaattcgagccatactttttttttttctcttttgcatgtaataaatggaaaacattttgatcaatttatacaaaaaa--t |
9105182 |
T |
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| Q |
96 |
aatgctttgttaacttcaatgaaatagtttttaac |
130 |
Q |
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| T |
9105183 |
aatgttttgtgtacttcaatgaaataggttttaac |
9105217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 9120178 - 9120274
Alignment:
| Q |
2 |
aaagcataaaagaaacttagaattcgagccataattttttctcttttgcatgtgataaatggaaaatattttgatcaatttataaagaaaaggtaatg |
99 |
Q |
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| T |
9120178 |
aaagcaaaaaagaaatataggattcgagccatacttttttct-ttttgcatgtaataaatggaaaatattttgattaatttatacaaaaaaagtaatg |
9120274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 20888398 - 20888358
Alignment:
| Q |
46 |
tttgcatgtgataaatggaaaatattttgatcaatttataa |
86 |
Q |
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| T |
20888398 |
tttgcatgtgataaattgaaaattgtttgatcaatttataa |
20888358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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