View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1026_low_4 (Length: 204)
Name: NF1026_low_4
Description: NF1026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1026_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3367352 - 3367471
Alignment:
| Q |
1 |
tgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatgatagattaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3367352 |
tgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatggtagattaaatg |
3367451 |
T |
|
| Q |
101 |
gtaaacataacaaaacacaata |
122 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
3367452 |
gtaaac--aacaaaacacaata |
3367471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 54188264 - 54188383
Alignment:
| Q |
1 |
tgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatgatagattaaatg |
100 |
Q |
| |
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||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54188264 |
tgcaagccatcaatcacacttaaagtcattggcagatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatggtagattaaatg |
54188363 |
T |
|
| Q |
101 |
gtaaacataacaaaacacaata |
122 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
54188364 |
gtaaac--aacaaaacacaata |
54188383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 8570904 - 8570795
Alignment:
| Q |
1 |
tgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatgatagattaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
8570904 |
tgcaagccatcaatcacgcttgaagtcattggcagatctgcaaa----------taattcaaaaacaaagattaagccacctaatatggtagattaaatg |
8570815 |
T |
|
| Q |
101 |
gtaaacataacaaaacacaata |
122 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
8570814 |
gtaaac--aacaaaacacaata |
8570795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28696864 - 28696755
Alignment:
| Q |
1 |
tgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaacaaagattaagccaccaaatatgatagattaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
28696864 |
tgcaagccatcaatcacgcttgaagtcattggcagatctgcaaa----------taattcaaaaacaaagattaagccacctaatatggtagattaaatg |
28696775 |
T |
|
| Q |
101 |
gtaaacataacaaaacacaata |
122 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
28696774 |
gtaaac--aacaaaacacaata |
28696755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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