View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10270_low_1 (Length: 555)
Name: NF10270_low_1
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 45 - 548
Target Start/End: Original strand, 44430673 - 44431178
Alignment:
| Q |
45 |
acagtgtgttcaaatcccctcgaaaacagtcgtaaaatgaccgttagtgccactttaataatagtnnnnnnnntaaggtacctgtgttttttatttatac |
144 |
Q |
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| T |
44430673 |
acagtgtgttcaaatcccctcgaaaacagtcgtaaaatgaccgttagtgccactttaataatagtaaaaaaaattaggtacctgtgttttttatttatac |
44430772 |
T |
|
| Q |
145 |
gaatcgaagcgacaatgaccaattttccaagttactaaacttgattgttagtactatttgctaagaactagaaagcaacacttgcttttccaactgaaat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430773 |
gaatcgaagcgacaatgaccaattttccaagttactaaacttgattgttagtactatttgctaagaactagaaagcaacacttgcttttccaactgaaat |
44430872 |
T |
|
| Q |
245 |
tatgaagtgatttccannnnnnnnnn--ctagagtttcattgagtttgagtgtacaaaattgaaaaaagtttagttttgaagttaatgggcatccatcaa |
342 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430873 |
tatgaagtgatttccatttattttttttctagagtttcattgagtttgagtgtacaaaattgaaaaaagtttagttttgaagttaatgggcatccatcaa |
44430972 |
T |
|
| Q |
343 |
tcatgcagaaattcataaacaaatgattgtgaaaagatattttcnnnnnnnnacaaactaaggttattcttttctttctgtattttcagtaaatatttgc |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44430973 |
tcatgcagaaattcataaacaaatgattgtgaaaagatattttcttttttttacaaactaaggttattcttttctttctgtattttcagtaaatatttgc |
44431072 |
T |
|
| Q |
443 |
tttattttatggccactatccacaaataagcatagattctctcttagagactctctcctagctgtgctgcttaggaatggatgattgtgctctgtcttct |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44431073 |
tttattttatggccactatccacaaataagcatagattctctcttagagactctctcctagccgtgctgcttaggaatggatgattgtgctctgtcttct |
44431172 |
T |
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| Q |
543 |
ctgctt |
548 |
Q |
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|||||| |
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| T |
44431173 |
ctgctt |
44431178 |
T |
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