View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10270_low_10 (Length: 250)
Name: NF10270_low_10
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15430130 - 15429892
Alignment:
| Q |
1 |
caaatcatccaaccaaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtattagcatcgcctta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15430130 |
caaatcatccaaacaaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtattagcatcgcctta |
15430031 |
T |
|
| Q |
101 |
attaagccactttactctagaattttaccactacaagttgttataaatgtttgataatatgaacaaattatatgaatgagtttacaactcctccatctcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
15430030 |
attaagccactttactctagaattttaccactacaagttgttataaatgtttgataatatgaacaaattatatgaatgagtttacaa---ctccatcttc |
15429934 |
T |
|
| Q |
201 |
nnnnnnnaacaacttggcctcctctccttgtatattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
15429933 |
tttttttaacaacttggcctcctctccttgtatatccatctc |
15429892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University