View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10270_low_13 (Length: 241)
Name: NF10270_low_13
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 894194 - 893973
Alignment:
| Q |
18 |
gtatctccatttcctatgtcagttactgtgattctatgttannnnnnn-cctctagcaaaacaatggaaccgcttgatttttaaagagtaaaaaagataa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894194 |
gtatctccatttcctatgtcagttactgtgattctatgttattttttttcctctagcaaaacaatggaaccgcttgatttttaaagagtaaaaaagataa |
894095 |
T |
|
| Q |
117 |
ccacccctattttccacctgtgtcttttcaagttgagggtattttttggaacaaaaataggccacactaaattgatgttttgcctttattaatagcaagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894094 |
ccacccctattttccacctgtgtcttttcaagttgagggtattttttggaacaaaaataggccacactaaattgatgttttgcctttattaatagcaagc |
893995 |
T |
|
| Q |
217 |
atagatagatgattcaatttag |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
893994 |
atagatagatgattcaatttag |
893973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 41374109 - 41374151
Alignment:
| Q |
169 |
aaaaataggccacactaaattgatgttttgcctttattaatag |
211 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
41374109 |
aaaaataggctacaccaaaatgatgttttgcctttattaatag |
41374151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University