View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10270_low_2 (Length: 441)
Name: NF10270_low_2
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 9016497 - 9016909
Alignment:
| Q |
14 |
agagaaaatcaggacgagagttcaaactaagagcagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaagcattattgttattttgatc |
113 |
Q |
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| T |
9016497 |
agagaaaatcaggacgagagttcaaactaagagcagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaggcattattgttattttgatc |
9016596 |
T |
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| Q |
114 |
tgaagcaacagaagaagatgaattattagaagaataatctaagctttttggtgggtctaaagtaaggggtcgagtgagaaagtcttgaaggataacacca |
213 |
Q |
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| T |
9016597 |
tgaagcaacagaagaagatgaattattagaagaataatctaagctttttgttgggtctaaagtaaggggtcgagtgagaaagtcttgaaggataacacc- |
9016695 |
T |
|
| Q |
214 |
ccaccaccaaaagtggaattacgagtactcattatcatgggtcgtgtgttttggtcattcaatgaagacaggtttatgtctttccaaacttcttccatgg |
313 |
Q |
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| T |
9016696 |
--accaccaaaagtggaattacgagtactcattatcatgggtcgtgtgttttggtcattcaatgaagacaggtttatgtctttccaaacttcttccatgg |
9016793 |
T |
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| Q |
314 |
ttaatttgtttctacaaagagaaaatgaaatttgtgatggtgatatttaacttcttttttgagacacaaggacaaggaaaaggacacactacactattga |
413 |
Q |
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| T |
9016794 |
ttaatttgtttctacaaagagaaaatgaaatttgtgatggtgatatttaacttcttttttgagacacaaggacaaggaaaaggacacactacactattga |
9016893 |
T |
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| Q |
414 |
gggtttgatttgtgag |
429 |
Q |
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| T |
9016894 |
gggtttgatttgtgag |
9016909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 5041928 - 5042042
Alignment:
| Q |
47 |
cagtgacaagaggtggtggggtcgtagagatagggcaataaaatgaagcattattgttattttgatctgaagcaacagaagaagatgaattattagaaga |
146 |
Q |
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| T |
5041928 |
cagtgacaagaggtaatgtggtcgttgaagtagggcaaaaaaaggaagcattattgttattttgatatgaagcaatgaaggaagatgaattattagaaga |
5042027 |
T |
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| Q |
147 |
ataatctaagctttt |
161 |
Q |
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| T |
5042028 |
ataatcgatgctttt |
5042042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 5042048 - 5042122
Alignment:
| Q |
215 |
caccaccaaaagtggaattacgagtactcattatcatgggtcgtgtgttttggtcattcaatgaagacaggttta |
289 |
Q |
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| T |
5042048 |
caccaccaaaagtagaattacgagtactcatcatcacagggcgtgtgttttcatggttcaatgaagataggttta |
5042122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 5042196 - 5042236
Alignment:
| Q |
347 |
gtgatggtgatatttaacttcttttttgagacacaaggaca |
387 |
Q |
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| T |
5042196 |
gtgatggtgatatttaacttctttttagagagaaaaggaca |
5042236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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