View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10270_low_3 (Length: 318)

Name: NF10270_low_3
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10270_low_3
NF10270_low_3
[»] chr4 (11 HSPs)
chr4 (1-248)||(6131900-6132147)
chr4 (27-248)||(6086978-6087198)
chr4 (94-245)||(32727970-32728121)
chr4 (27-200)||(16061380-16061555)
chr4 (23-180)||(18886184-18886342)
chr4 (97-185)||(6166387-6166475)
chr4 (94-194)||(38138762-38138862)
chr4 (223-308)||(6131801-6131890)
chr4 (94-187)||(36441082-36441175)
chr4 (22-71)||(14193747-14193796)
chr4 (30-79)||(24540086-24540135)
[»] chr6 (16 HSPs)
chr6 (26-248)||(1112421-1112645)
chr6 (95-248)||(1522551-1522706)
chr6 (96-197)||(7201105-7201206)
chr6 (94-197)||(26497849-26497953)
chr6 (24-187)||(10669974-10670138)
chr6 (96-193)||(28847765-28847862)
chr6 (94-187)||(609614-609707)
chr6 (97-186)||(17364249-17364337)
chr6 (102-187)||(29288422-29288507)
chr6 (199-248)||(31533542-31533591)
chr6 (95-148)||(3361954-3362007)
chr6 (95-136)||(17902286-17902327)
chr6 (247-308)||(1112660-1112725)
chr6 (252-308)||(31533611-31533671)
chr6 (22-71)||(26497775-26497824)
chr6 (23-67)||(3362037-3362081)
[»] chr1 (15 HSPs)
chr1 (22-248)||(7380298-7380524)
chr1 (91-248)||(26687686-26687842)
chr1 (94-197)||(50509786-50509889)
chr1 (95-200)||(24892007-24892112)
chr1 (103-197)||(5882533-5882627)
chr1 (103-185)||(9672504-9672586)
chr1 (94-187)||(23688378-23688471)
chr1 (96-186)||(29864668-29864758)
chr1 (199-246)||(47938765-47938812)
chr1 (199-248)||(24179317-24179366)
chr1 (95-151)||(50262528-50262583)
chr1 (201-248)||(24491851-24491898)
chr1 (201-248)||(1094733-1094781)
chr1 (22-80)||(24891928-24891986)
chr1 (260-308)||(24491927-24491978)
[»] chr2 (9 HSPs)
chr2 (31-248)||(5868912-5869131)
chr2 (28-246)||(18242074-18242294)
chr2 (94-248)||(26290367-26290521)
chr2 (21-197)||(44259746-44259923)
chr2 (94-196)||(2104085-2104187)
chr2 (94-185)||(30707048-30707139)
chr2 (199-248)||(32629018-32629067)
chr2 (247-312)||(26290283-26290352)
chr2 (247-308)||(5869146-5869211)
[»] chr7 (16 HSPs)
chr7 (23-248)||(39608087-39608315)
chr7 (24-197)||(38190193-38190366)
chr7 (22-187)||(27224204-27224371)
chr7 (97-197)||(40230888-40230987)
chr7 (95-194)||(33540092-33540191)
chr7 (94-187)||(44767318-44767411)
chr7 (26-187)||(19468252-19468413)
chr7 (95-197)||(22317679-22317781)
chr7 (96-186)||(14802681-14802771)
chr7 (96-186)||(15249674-15249764)
chr7 (199-248)||(44614115-44614164)
chr7 (199-248)||(38918720-38918769)
chr7 (199-248)||(39921314-39921363)
chr7 (199-248)||(39824694-39824743)
chr7 (247-306)||(39921378-39921441)
chr7 (247-308)||(44614035-44614100)
[»] chr8 (17 HSPs)
chr8 (94-198)||(13751438-13751542)
chr8 (128-248)||(45231554-45231674)
chr8 (94-200)||(9946711-9946817)
chr8 (24-197)||(44004245-44004417)
chr8 (95-187)||(24534905-24534997)
chr8 (94-196)||(6976560-6976662)
chr8 (94-197)||(33474606-33474709)
chr8 (94-215)||(21466883-21467006)
chr8 (106-173)||(1738690-1738757)
chr8 (22-80)||(9946839-9946897)
chr8 (23-72)||(45231683-45231732)
chr8 (101-149)||(13569254-13569302)
chr8 (95-185)||(31661310-31661400)
chr8 (26-79)||(4491879-4491932)
chr8 (199-238)||(34592131-34592170)
chr8 (199-242)||(38153640-38153683)
chr8 (23-72)||(13751365-13751414)
[»] chr3 (4 HSPs)
chr3 (24-197)||(54561101-54561273)
chr3 (96-199)||(42624754-42624857)
chr3 (95-162)||(7741873-7741939)
chr3 (96-142)||(19902965-19903011)
[»] chr5 (7 HSPs)
chr5 (94-193)||(11245388-11245487)
chr5 (95-197)||(22868036-22868138)
chr5 (96-193)||(27246221-27246318)
chr5 (110-187)||(17535777-17535854)
chr5 (199-242)||(15507097-15507140)
chr5 (137-205)||(6967337-6967405)
chr5 (260-312)||(15507007-15507062)
[»] scaffold0005 (1 HSPs)
scaffold0005 (95-184)||(284267-284356)
[»] scaffold0125 (1 HSPs)
scaffold0125 (94-184)||(5769-5859)
[»] scaffold0092 (1 HSPs)
scaffold0092 (199-242)||(45173-45216)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 6132147 - 6131900
Alignment:
Q  1 aaaattagatactcttcgaagtcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgatttttt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||         |||||||||||    
T  6132147 aaaattagatactctttgaagtcagggccgtccctataaaactggaggttcgactctcgtagtaaaaataggtatctaataaaaaaaagcacgatttttt 6132048  T
Q  101 aaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||    
T  6132047 aaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttactaaaggcgtgctt 6131948  T
Q  201 gttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6131947 gttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 6131900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 6086978 - 6087198
Alignment:
Q  27 gccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaagattaatcttctatttaaatt 126  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||         ||| |||||||||||  ||||||||| ||||||||||    
T  6086978 gccgttcctataaaactggaggctcggctctcgtagtaaaaataggtccctaataaaaaagcgcacaattttttaaaat-attaatcttatatttaaatt 6087076  T
Q  127 gaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaaaaaat 226  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6087077 gaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttactaaagacgtgcttgttaatggaaatagatggcaaaaaat 6087176  T
Q  227 tcaagatatatagtagttttct 248  Q
    ||||||||||||||||||||||    
T  6087177 tcaagatatatagtagttttct 6087198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 32727970 - 32728121
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||| |||||||  |||||||||||| ||||     
T  32727970 atttttttaaaagattaatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttactaaagt 32728069  T
Q  194 cgtgcttgttaatggaaatagatgacaaaaaattcaagatatatagtagttt 245  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32728070 cgtgcttgttaatggaaatagatgatcaaaaattcaagatatatagtagttt 32728121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 16061380 - 16061555
Alignment:
Q  27 gccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnnt-cacgattttttaaaaagattaatcttctatttaaat 125  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||          ||| ||||||| ||||||| ||||||||||||||||    
T  16061380 gccgtccctataaaactggaggctcggctctcgtagtaaaaataggcctctaataaaaaaaacgcacaatttttttaaaagatcaatcttctatttaaat 16061479  T
Q  126 tgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaatta-tttttaccaaagacgtgctt 200  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  16061480 tgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaagacgtgctt 16061555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 18886342 - 18886184
Alignment:
Q  23 cagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntc-acgattttttaaaaagattaatcttctattt 121  Q
    ||||||||||||||||||||| |||| ||| |||| ||||||||||||| || |||||           || ||||||| ||||||||||||||||||||    
T  18886342 cagggccgtccctataaaactagaggctcgactcttgtagtaaaaatagatccctaataaaaaaagcgtacaatttttttaaaagattaatcttctattt 18886243  T
Q  122 aaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaatta 180  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||||| |||||    
T  18886242 aaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 6166475 - 6166387
Alignment:
Q  97 ttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttt 185  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  6166475 tttttaaaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaattattttt 6166387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 38138862 - 38138762
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||  || || |||||||||| |  |||||||||||| |||||    
T  38138862 atttttttaaaagattaatattttatttaaattgaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaaaga 38138763  T
Q  194 c 194  Q
    |    
T  38138762 c 38138762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 6131890 - 6131801
Alignment:
Q  223 aaattcaagatatatagtagttttctctgaaatgca-tttaaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttg 308  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||  || |||||||||||||||   |||||||||||||||    
T  6131890 aaattcaagatatatagtagttttctcttaaatgcattttaaattgtaatggcctagtagttgtgtatgtaactgagacttttatatttg 6131801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 36441082 - 36441175
Alignment:
Q  94 attttttaaaaagattaa-tcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||||||  ||||||||| ||||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||||||||||    
T  36441082 attttttttaaagattaaatcttctatttaaactgaaaataacactcgtataatta-tattagccactgaaatcaaaattagcaattatttttac 36441175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 14193747 - 14193796
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaatag 71  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  14193747 tcagggccgtccctatcaaactggaggctcgactctcgtagtaaaaatag 14193796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 24540135 - 24540086
Alignment:
Q  30 gtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaa 79  Q
    |||||||| ||||||||||| |||||||| |||||||| |||| ||||||    
T  24540135 gtccctatgaaactggaggtccggctctcttagtaaaattaggcctctaa 24540086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 1112421 - 1112645
Alignment:
Q  26 ggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnnt--cacgattttttaaaaagattaatcttctatttaa 123  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||||||| ||||           ||| ||||||| ||||||||||||||||||||||    
T  1112421 ggccgttcctataaaactggaggctcgactctcgtagtaaaaataggtctttaataaaaaaaaatacacaatttttttaaaagattaatcttctatttaa 1112520  T
Q  124 attgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaaaa 223  Q
    ||||||||||||| |||||||||| ||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  1112521 attgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttactaaagacgtgcttgttaatggaaatagatgacaaaa 1112620  T
Q  224 aattcaagatatatagtagttttct 248  Q
    |||| ||||||||||||||||||||    
T  1112621 aatttaagatatatagtagttttct 1112645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 1522706 - 1522551
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataat--gattattcgccaccgaaatcaaaattagtaattatttttaccaaag 192  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||| ||||||||  ||||||||||  ||||    
T  1522706 tttttttaagagattaatcttctatttaaattgaaaataacactcgtataatatggttattagccaccgaaattaaaattagctattatttttattaaag 1522607  T
Q  193 acgtgcttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||| ||||||||||| |||||||| ||||||||| | |||||||||||||||||    
T  1522606 acgtgtttgttaatggagatagatgagaaaaaattccaaatatatagtagttttct 1522551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 7201206 - 7201105
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacg 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||    
T  7201206 ttttttaaaagattaatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttactaaagacg 7201107  T
Q  196 tg 197  Q
    ||    
T  7201106 tg 7201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 26497849 - 26497953
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaa-taacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaag 192  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  26497849 atttttttaaaagattaatcttctatttaaattgaaaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaag 26497948  T
Q  193 acgtg 197  Q
    |||||    
T  26497949 acgtg 26497953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 10670138 - 10669974
Alignment:
Q  24 agggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaa-gattaatcttctattta 122  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||||||||| |  ||||         ||| |||||| ||||| || ||||||||||||||    
T  10670138 agggccgtccctatgaaactggaggctcgactctcatagtaaaaataggcccttaataaaaaaaaacacaatttttaaaaaaagaataatcttctattta 10670039  T
Q  123 aattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||| |||||||||  ||||||||||||||| | ||| |||||||||||||||||||| ||||||    
T  10670038 aattaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttac 10669974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 28847765 - 28847862
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||| |||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||  |||||||||||| |||||    
T  28847765 ttttttaaaagattaatcctctatttaaattaaaaataacacatgtataatgattattagccactgaaatcaaaattaacaattatttttactaaaga 28847862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 609614 - 609707
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||   || |||||||||| ||||| ||||||    
T  609614 atttttttaaaaggttaatcttctatttatattgaaaataacactcgtataatgattattagccatgaaagtcaaaattagcaattagttttac 609707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 17364337 - 17364249
Alignment:
Q  97 ttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttta 186  Q
    |||| ||||||  |||||||||||||||||||||| ||||  ||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  17364337 tttttaaaagagcaatcttctatttaaattgaaaagaacagccgtataatgattattagccaccg-aatcaaaattagcaattattttta 17364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 29288422 - 29288507
Alignment:
Q  102 aaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||| |||||| || |||||||| ||||||| || ||||||||||    
T  29288422 aaaagatcaatcttctatttaaattgaaaagaacatccgtataataattattagcaaccgaaattaaaattaatatttatttttac 29288507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 31533542 - 31533591
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  31533542 ttgttaatggaaatagatgataaaaaatttaagatatatagtagttttct 31533591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 3362007 - 3361954
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatga 148  Q
    |||||| |||||| |||||||||||||||||| ||||||||||| |||||||||    
T  3362007 tttttttaaaagactaatcttctatttaaattaaaaataacacttgtataatga 3361954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 17902286 - 17902327
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataaca 136  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  17902286 ttttttaaaaagaataatcttctatttaaattgaaaataaca 17902327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 1112660 - 1112725
Alignment:
Q  247 ctctgaaatgcattt-aaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttg 308  Q
    ||||||||||||||| ||||||||||||  || |||||||||||||||   |||||||||||||||    
T  1112660 ctctgaaatgcattttaaattgtaatggcctagtagttgtgtatgtaattgagacttttatatttg 1112725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 31533611 - 31533671
Alignment:
Q  252 aaatgcat-ttaaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttg 308  Q
    |||||||| ||||||||||||||  ||||||||||||||||||   |||||||||||||||    
T  31533611 aaatgcatattaaattgtaatggcctaatagttgtgtatgtaattgagacttttatatttg 31533671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 26497775 - 26497824
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaatag 71  Q
    |||||||| ||||||| ||||| |||| ||||||||| ||||||||||||    
T  26497775 tcagggccatccctatgaaactagaggctcggctctcatagtaaaaatag 26497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 3362081 - 3362037
Alignment:
Q  23 cagggccgtccctataaaactggaggttcggctctcgtagtaaaa 67  Q
    ||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  3362081 cagggccgtccctatgaaaccggaggttaggctctcatagtaaaa 3362037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 7380298 - 7380524
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaagattaatcttctattt 121  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||||||| | |||||         ||| ||||||| ||||||||||||||||||||    
T  7380298 tcagggccgtccctataaaattggaggctcgtctctcgtagtaaaaataggcccctaataaaaaaatgcacaatttttttaaaagattaatcttctattt 7380397  T
Q  122 aaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaa 221  Q
    |||||||||||||||||| ||| ||| ||||| | ||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  7380398 aaattgaaaataacactcatattatggttattagtcaccgaaattaaaattagcaattatttttactaaagacgtacttgttaatggaaatagatgacaa 7380497  T
Q  222 aaaattcaagatatatagtagttttct 248  Q
    |||||||||||||||||| ||||||||    
T  7380498 aaaattcaagatatatagaagttttct 7380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 26687686 - 26687842
Alignment:
Q  91 acgattttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaa 190  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||  |||||||||||| ||    
T  26687686 acgatttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttactaa 26687785  T
Q  191 agacgtgcttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26687786 agacgtgcttgttaatggaaatagatg-caaaaaattcaagatatatagtagttttct 26687842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 50509889 - 50509786
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||    
T  50509889 atttttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaaga 50509790  T
Q  194 cgtg 197  Q
    ||||    
T  50509789 cgtg 50509786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 24892007 - 24892112
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagac 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||  |||||||||||| ||||||    
T  24892007 tttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaagac 24892106  T
Q  195 gtgctt 200  Q
    ||||||    
T  24892107 gtgctt 24892112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 5882533 - 5882627
Alignment:
Q  103 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtg 197  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||    
T  5882533 aaagattaatcttctattaaaattgaaaataacgctcgtataataattattaaccaccgaaatcaaaattaataattatttttactaaagacgtg 5882627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 9672586 - 9672504
Alignment:
Q  103 aaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttt 185  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  9672586 aaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 23688378 - 23688471
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||  ||||||||||||  ||||||||||||    
T  23688378 atttttttaaaagaataatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttac 23688471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 29864668 - 29864758
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttta 186  Q
    ||||||||||||  |||||||||||||||||||||||||||   |||||||||||||| |||||| |||| |||||||| |||||||||||    
T  29864668 tttttaaaaagaacaatcttctatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattattttta 29864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 47938812 - 47938765
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagtttt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47938812 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagtttt 47938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 24179317 - 24179366
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24179317 ttgttaatggaaatagatgacaaaaaatttaagatatatagtagttttct 24179366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 50262583 - 50262528
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgatta 151  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||    
T  50262583 ttttttaaaaagaataatcttctatttaaattgaaaataata-tcgtataatgatta 50262528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 24491851 - 24491898
Alignment:
Q  201 gttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24491851 gttaattgaaatagatgacaaaaaaatcaagatatatagtagttttct 24491898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 1094733 - 1094781
Alignment:
Q  201 gttaatggaaatagatgac-aaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  1094733 gttaatggaaatagatgacaaaaaaaattaagatatatagtagttttct 1094781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 24891928 - 24891986
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaat 80  Q
    ||||| || ||| |||||||||||||| || ||| |||||||||||||||| |||||||    
T  24891928 tcaggaccatccttataaaactggaggctcagctgtcgtagtaaaaataggcctctaat 24891986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 24491927 - 24491978
Alignment:
Q  260 ttaaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttg 308  Q
    ||||||||||||||  ||||||||||||||||||   |||||||||||||||    
T  24491927 ttaaattgtaatggcctaatagttgtgtatgtaatttagacttttatatttg 24491978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 5868912 - 5869131
Alignment:
Q  31 tccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntc--acgattttttaaaaagattaatcttctatttaaattga 128  Q
    ||||||||||||| |||| ||||||||||||||||||||||| | || ||         |  || ||||||| |||||||||||||||||||||||||||    
T  5868912 tccctataaaactagaggctcggctctcgtagtaaaaataggcccctgataaaaaaaaacgcacaatttttttaaaagattaatcttctatttaaattga 5869011  T
Q  129 aaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaaaaaattc 228  Q
    ||||||||||||||||||| ||||| |||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5869012 aaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttactaaagacgtgcttgttaatggaaatagatgacaaaaaattc 5869111  T
Q  229 aagatatatagtagttttct 248  Q
    ||||||||||||||||||||    
T  5869112 aagatatatagtagttttct 5869131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 18242074 - 18242294
Alignment:
Q  28 ccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntc-acgatttttta-aaaagattaatcttctatttaaat 125  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||        |  || |||||||  ||||||||||||||||||||||||    
T  18242074 ccgtccctataaaactggaggcttggctctcgtagtaaaaataggtctctaataaaaaaaatatacaattttttttaaaagattaatcttctatttaaat 18242173  T
Q  126 tgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaaaaaa 225  Q
     ||||||||||||||||||||| |||||  ||||| |||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18242174 cgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttactaaagacgtgcttgttaattgaaatagatgacaaaaaa 18242273  T
Q  226 ttcaagatatatagtagtttt 246  Q
    |||||||||||||||||||||    
T  18242274 ttcaagatatatagtagtttt 18242294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 26290521 - 26290367
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||| |||||||||||| |||||    
T  26290521 atttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttactaaaga 26290422  T
Q  194 cgtgcttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
     || ||||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  26290421 tgttcttgttaatggaaatagatgataaaaaattcaagaaatatagtaggtttct 26290367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 44259746 - 44259923
Alignment:
Q  21 gtcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnnt-cacgattttttaaaaagattaatcttctat 119  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||||||   |  |        | ||| |||||||||||||||||||||||||     
T  44259746 gtcagggccgtccctataaaaccggaggctcggctctcagagtaaaaataggttcatggtaaaaagaatgcacaattttttaaaaagattaatcttctag 44259845  T
Q  120 ttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtg 197  Q
    ||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||||||||||| |||||||||    
T  44259846 ttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttactaaagacgtg 44259923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 2104187 - 2104085
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||| |||||    
T  2104187 atttttttaaaagattaatcttctatttaaattgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattatttttacgaaaga 2104088  T
Q  194 cgt 196  Q
    |||    
T  2104087 cgt 2104085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 30707139 - 30707048
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttt 185  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  30707139 atttttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt 30707048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 32629018 - 32629067
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  32629018 ttgttaatgaaaatagatgacaaaaatttcaagatatatagtagttttct 32629067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 26290352 - 26290283
Alignment:
Q  247 ctctgaaatgcattt-aaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttgattc 312  Q
    ||||||||||||||| ||||||||||||  || |||||||||||||||   |||||||||||||||||||    
T  26290352 ctctgaaatgcattttaaattgtaatggcctagtagttgtgtatgtaactgagacttttatatttgattc 26290283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 5869146 - 5869211
Alignment:
Q  247 ctctgaaatgcattt-aaattgtaatggtttaatagttgtgtatgta---aagacttttatatttg 308  Q
    ||||||||||||||| ||||||||||||  || ||||||||||||||   ||||||||||||||||    
T  5869146 ctctgaaatgcattttaaattgtaatggcctagtagttgtgtatgtaactaagacttttatatttg 5869211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 39608315 - 39608087
Alignment:
Q  23 cagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnnt-cacgatttttta--aaaagattaatcttctat 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||   |||||          ||| |||||||   || |||||||||||||||    
T  39608315 cagggccgtccctataaaactggaggctcggctctcgtagtaaaaataggctcctaataaaaaaaacgcacaatttttttttaagagattaatcttctat 39608216  T
Q  120 ttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgac 219  Q
    ||||||||||||||||||| |||||||  ||||| ||||||||||| |||||||  |||||||||||| |||||||||| |||||||||||||||||||     
T  39608215 ttaaattgaaaataacactggtataattgttattagccaccgaaattaaaattaacaattatttttactaaagacgtgcctgttaatggaaatagatgaa 39608116  T
Q  220 aaaaaattcaagatatatagtagttttct 248  Q
    ||||||||| | |||||||||||||||||    
T  39608115 aaaaaattccaaatatatagtagttttct 39608087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 38190193 - 38190366
Alignment:
Q  24 agggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaagattaatcttctatttaa 123  Q
    ||||||||| |||| ||| |||||| | | |||||  |||||||||||| |||||||         ||| ||||||| ||||||||||| ||||||||||    
T  38190193 agggccgtctctatgaaattggaggcttgactctcagagtaaaaataggcctctaataaaaaaacacacaatttttttaaaagattaatattctatttaa 38190292  T
Q  124 attgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtg 197  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||    
T  38190293 attgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaaagacgtg 38190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 27224204 - 27224371
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacg----attttttaaaaagattaatcttct 117  Q
    ||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||          |||    ||||||| | ||||||||||||||    
T  27224204 tcagggccgtccctataaaactggaagctcagctctcatagtaaaaataggtctctaataaaaaaaaaaacgcacaatttttttataagattaatcttct 27224303  T
Q  118 atttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||||||  ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  27224304 atttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttac 27224371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 40230987 - 40230888
Alignment:
Q  97 ttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgt 196  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||||||||    
T  40230987 tttttaaaagattaatcttctatttaaattgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattattttta-caaagacgt 40230889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 33540092 - 33540191
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagac 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| |||||||||||||| |||||||||||| ||||||    
T  33540092 tttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaagac 33540191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 44767318 - 44767411
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  44767318 atttttttataagattaatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttac 44767411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 19468252 - 19468413
Alignment:
Q  26 ggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnnt-cacgattttttaaaaagattaatcttctatttaaa 124  Q
    ||||||||||||||||  ||||| ||| ||||| ||||||||||| | || ||||        | ||| ||||||| |||||||||||||| ||||||||    
T  19468252 ggccgtccctataaaatcggaggctcgactctcatagtaaaaataagcctttaataataaaaatgcacaatttttttaaaagattaatcttttatttaaa 19468351  T
Q  125 ttgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||||||||||| |||||||||||||||| |||||| ||||  ||||||| ||||||||||||    
T  19468352 ttgaaaataacattcgtataatgattattagccacc-aaatataaattagcaattatttttac 19468413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 22317679 - 22317781
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagac 194  Q
    |||||| |||||||| |||||||||||||||||||||||  ||||||||||| |||||| | ||| |||||||||||||| |||||||||||| | ||||    
T  22317679 tttttttaaaagattcatcttctatttaaattgaaaatactactcgtataattattattagtcactgaaatcaaaattagaaattatttttactacagac 22317778  T
Q  195 gtg 197  Q
    |||    
T  22317779 gtg 22317781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 14802771 - 14802681
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttta 186  Q
    ||||| ||||||  |||||| |||||||||||||| |||||  |||||||||| |||| |||| ||||||||||||||  |||||||||||    
T  14802771 ttttttaaaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 14802681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 15249764 - 15249674
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttta 186  Q
    ||||| ||||||  |||||| |||||||||||||| |||||  |||||||||| |||| |||| ||||||||||||||  |||||||||||    
T  15249764 ttttttaaaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 15249674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 44614164 - 44614115
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  44614164 ttgttgatggaaatagatgacaaaaaattcaagatgtatagtagttttct 44614115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 38918720 - 38918769
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  38918720 ttgttaatggaaatggatgacaaaaaatttaagatatataggagttttct 38918769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 39921314 - 39921363
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  39921314 ttgttaatggaaatagaagacaaaaaattcaagatatttagcagttttct 39921363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 39824743 - 39824694
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtagttttct 248  Q
    ||||||||||||||| ||||||||||||||||| |||| ||| |||||||    
T  39824743 ttgttaatggaaataaatgacaaaaaattcaaggtataaagtggttttct 39824694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 39921378 - 39921441
Alignment:
Q  247 ctctgaaatgcat-ttaaattgtaatggtttaatagttgtgtatgtaa---agacttttatatt 306  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||   |||||||||||||    
T  39921378 ctctgaaatgcatgttaaattgtaatggtctagtagttgtgtatgtaattgagacttttatatt 39921441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 44614100 - 44614035
Alignment:
Q  247 ctctgaaatgcattt-aaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttg 308  Q
    ||||||||||||||| ||||||||||||  || |||||||||||||||   |||||||||||||||    
T  44614100 ctctgaaatgcattttaaattgtaatggcctagtagttgtgtatgtaattgagacttttatatttg 44614035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 13751438 - 13751542
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||| |||||    
T  13751438 attttttgaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttactaaaga 13751537  T
Q  194 cgtgc 198  Q
    |||||    
T  13751538 cgtgc 13751542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 45231674 - 45231554
Alignment:
Q  128 aaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaatggaaatagatgacaaaaaatt 227  Q
    |||| ||||||||||||||| ||||| |||||| |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  45231674 aaaaaaacactcgtataatggttattagccaccaaaattaaaattagcaattatttttactaaagacctgcttgttaatggaaatagatgataaaaaatt 45231575  T
Q  228 caagatatatagtagttttct 248  Q
    ||| |||||||||||||||||    
T  45231574 caaaatatatagtagttttct 45231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 9946817 - 9946711
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||  |||||||||||| |||||    
T  9946817 atttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaaaga 9946718  T
Q  194 cgtgctt 200  Q
     ||||||    
T  9946717 tgtgctt 9946711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 44004245 - 44004417
Alignment:
Q  24 agggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaagattaatcttctatttaa 123  Q
    |||| ||||| ||||||||| |||| ||||||||| ||||||||| || || |||||         ||| ||||||| ||||||| ||||||||||||||    
T  44004245 agggtcgtccttataaaactcgaggctcggctctcatagtaaaaacagatccctaataaaaaaac-cacaatttttttaaaagataaatcttctatttaa 44004343  T
Q  124 attgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtg 197  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||||  |||||||||||| |||||||||    
T  44004344 attgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaaagacgtg 44004417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 24534997 - 24534905
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  24534997 tttttttaaaagattaattttctgtttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttac 24534905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 6976560 - 6976662
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    |||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| |||||||||||| |||||    
T  6976560 attttttaaaaaaattattcttcaatttaaattgaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttactaaaga 6976659  T
Q  194 cgt 196  Q
    |||    
T  6976660 cgt 6976662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 33474709 - 33474606
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| || ||||||||||||  || || |||||||||||||| |||||||||||| |||||    
T  33474709 atttttttaaaagattaatcttcaatttaaattaaaaataacattcatataatgattatcagctactgaaatcaaaattagcaattatttttactaaaga 33474610  T
Q  194 cgtg 197  Q
    ||||    
T  33474609 cgtg 33474606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 21466883 - 21467006
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||   ||||||||||||| ||||| |||||| |||||    
T  21466883 atttttttaaaagattaatcttctgtttatattgaaaataacactcttataatgattattagccatgaaaatcaaaattagcaattagttttactaaaga 21466982  T
Q  194 cgtgcttgttaa--tggaaataga 215  Q
     ||| || ||||  ||||||||||    
T  21466983 ggtgttttttaacttggaaataga 21467006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 1738757 - 1738690
Alignment:
Q  106 gattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaatta 173  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||||  ||||||||||| |||||||    
T  1738757 gattaatcttttatttaaattggaaataacacttgtataatgattatgagccaccgaaattaaaatta 1738690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 9946897 - 9946839
Alignment:
Q  22 tcagggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaat 80  Q
    |||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||    
T  9946897 tcagggtcgtccctacaaaactagaggctcggctctcgtagtaaaaataggtccctaat 9946839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 45231732 - 45231683
Alignment:
Q  23 cagggccgtccctataaaactggaggttcggctctcgtagtaaaaatagg 72  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  45231732 caggtccgtccctataaaactggaggctcggctctcgtaataaaaatagg 45231683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 13569254 - 13569302
Alignment:
Q  101 aaaaagattaatcttctatttaaattgaaaataacactcgtataatgat 149  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  13569254 aaaaaaattaatcttctatttatgttgaaaataacactcgtataatgat 13569302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 31661310 - 31661400
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattattttt 185  Q
    |||||| ||||||  |||||||||||| |||||||||||||   ||||||||||| |||   || | ||||||||||||| ||||||||||    
T  31661310 tttttttaaaagaacaatcttctatttgaattgaaaataacttccgtataatgatcattattcatcaaaatcaaaattagcaattattttt 31661400  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 4491932 - 4491879
Alignment:
Q  26 ggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaa 79  Q
    |||||||||| | ||||||||||| |||||||| |||||||| |||||||||||    
T  4491932 ggccgtccctgtgaaactggaggtccggctctcttagtaaaattaggtctctaa 4491879  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 34592131 - 34592170
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatata 238  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  34592131 ttgttaatggaaatagatgacagaaaattcaaaatatata 34592170  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 38153640 - 38153683
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtag 242  Q
    |||||||||||||||||||| |||||||| |||||||| |||||    
T  38153640 ttgttaatggaaatagatgataaaaaatttaagatatacagtag 38153683  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 13751365 - 13751414
Alignment:
Q  23 cagggccgtccctataaaactggaggttcggctctcgtagtaaaaatagg 72  Q
    ||||| |||||||||||||||||||| | | ||||| |||||||||||||    
T  13751365 cagggtcgtccctataaaactggaggcttgactctcatagtaaaaatagg 13751414  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 54561273 - 54561101
Alignment:
Q  24 agggccgtccctataaaactggaggttcggctctcgtagtaaaaataggtctctaatnnnnnnnntcacgattttttaaaaagattaatcttctatttaa 123  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||||| ||| ||||         ||| ||||||| ||| ||||||||||||||||||    
T  54561273 agggccgtctctataaaactggaggctcggctctcattgtaaaaatagttctttaataaaaaaatgcacaatttttttaaa-gattaatcttctatttaa 54561175  T
Q  124 attgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtg 197  Q
    |||||||||||||||| ||||||||||||| || ||| ||||||||||||| ||||| |||||| |||||||||    
T  54561174 attgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttactaaagacgtg 54561101  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 42624857 - 42624754
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacg 195  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||  |||||||    
T  42624857 ttttttaaaagattaatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattatttttattaaagacg 42624758  T
Q  196 tgct 199  Q
    ||||    
T  42624757 tgct 42624754  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 7741873 - 7741939
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccga 162  Q
    |||||| ||||||  |||||| |||||||||||||||||||| ||||||||| |||||| ||||||||    
T  7741873 tttttttaaaagagaaatcttatatttaaattgaaaataaca-tcgtataataattattagccaccga 7741939  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 19902965 - 19903011
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgta 142  Q
    ||||| |||||| || |||||||||||||||||||||||||| ||||    
T  19902965 ttttttaaaagaatattcttctatttaaattgaaaataacacccgta 19903011  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 11245487 - 11245388
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| |||||    
T  11245487 attttttcaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttactaaaga 11245388  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 22868138 - 22868036
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagac 194  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||    
T  22868138 tttttttaaaagattaatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaaagac 22868039  T
Q  195 gtg 197  Q
    |||    
T  22868038 gtg 22868036  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 27246318 - 27246221
Alignment:
Q  96 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaaga 193  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||| |||||    
T  27246318 ttttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattacttttactaaaga 27246221  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 17535777 - 17535854
Alignment:
Q  110 aatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttttac 187  Q
    |||||| |||||||||||||| |||||  |||||||||| |||| |||| ||||||||||||||| | ||||||||||    
T  17535777 aatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattagcagttatttttac 17535854  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 15507140 - 15507097
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtag 242  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  15507140 ttgttaacggaaatagatgacaaaaaattcaagatatatagtag 15507097  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 6967337 - 6967405
Alignment:
Q  137 ctcgtataatgattattcgccaccgaaatcaaaattagtaattatttttaccaaagacgtgcttgttaa 205  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| || ||||||||| ||||    
T  6967337 ctcgtataatgattattagccactgaaattaaaattagcaattacttttactaaggacgtgctttttaa 6967405  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 15507062 - 15507007
Alignment:
Q  260 ttaaattgtaatggtttaatagttgtgtatgtaa---agacttttatatttgattc 312  Q
    ||||||||||||||| || |||||||||||||||   |||||||||||||||||||    
T  15507062 ttaaattgtaatggtctattagttgtgtatgtaattgagacttttatatttgattc 15507007  T

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Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 284267 - 284356
Alignment:
Q  95 ttttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttt 184  Q
    |||||| || ||||||| ||||||| |||||| ||||||||||||| ||||||||||||  |||||||||| |||||||| |||||||||    
T  284267 tttttttaagagattaaacttctatctaaattaaaaataacactcgcataatgattattaaccaccgaaattaaaattagcaattatttt 284356  T

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Target: scaffold0125 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 5769 - 5859
Alignment:
Q  94 attttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattcgccaccgaaatcaaaattagtaattatttt 184  Q
    ||||||| ||||||  ||||||| ||||||||| |||| ||||  | ||||||||||||| |||||||||||||||||||| |||||||||    
T  5769 atttttttaaaagagcaatcttcaatttaaattaaaaacaacatccatataatgattattagccaccgaaatcaaaattagcaattatttt 5859  T

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Target: scaffold0092 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 45173 - 45216
Alignment:
Q  199 ttgttaatggaaatagatgacaaaaaattcaagatatatagtag 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  45173 ttgttaatggaaatagatgacgaaaaattcaagatatatagtag 45216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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