View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10270_low_4 (Length: 309)
Name: NF10270_low_4
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 6893405 - 6893696
Alignment:
| Q |
1 |
aatacaaaatcaagaagatattcagcatcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttctt |
100 |
Q |
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| T |
6893405 |
aatacaaaatcaagaagatattcagcatcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttctt |
6893504 |
T |
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| Q |
101 |
ctcctggatatacattaaaaggtacattaatttcatttttatttcacttcaagaagttcataatgtatttannnnnnnnnnnnnnnnngtgactaaagtt |
200 |
Q |
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| T |
6893505 |
ctcctggatatacattaaaaggtacattaatttcatttttatttcacttcaagaagttcataatgttttta-ttttttttatttttttgtgactaaagtt |
6893603 |
T |
|
| Q |
201 |
acatcaagtttttcttaaaattttatgatttattttgcagatgaaattgacccttcaacctattcttttactgctgctcttaaaggtactaaa |
293 |
Q |
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| T |
6893604 |
acatcaagtttttcttaaaattttatgatttgttttgcagatgaaattgacccttcaacctattcttttactactgctcttaaaggtactaaa |
6893696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 5940035 - 5939950
Alignment:
| Q |
44 |
ttagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtacatta |
129 |
Q |
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| T |
5940035 |
ttagagaagatacaaggtctcaaagatcaaatataaccatttctagtactgcttcttctcctggatacccttttaaaggtacatta |
5939950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 5939878 - 5939823
Alignment:
| Q |
233 |
ttttgcagatgaaattgacccttcaacctattcttttactgctgctcttaaaggta |
288 |
Q |
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| T |
5939878 |
ttttgcagatgaaattgacccttcaacatattctttcaccactgcccttaaaggta |
5939823 |
T |
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