View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10270_low_8 (Length: 252)
Name: NF10270_low_8
Description: NF10270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10270_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 4164859 - 4164634
Alignment:
| Q |
11 |
caaaggttagggtattgttgaaaagtgtctatattgatattttaatatataattaatgatgttttgtgcataaaatcaaaattaccaaaaacaagatgtg |
110 |
Q |
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| T |
4164859 |
caaaggttagggtattgttgaaaagtgtctatattgatattttaatatataattaatgatgttttatgcataaaatcaaaattaccaaaaacaagatgtg |
4164760 |
T |
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| Q |
111 |
tcacaaaataaagcaatgtgtatagggattttattgtagttttgatggtaattacatttcttaagtttatagtagatatgcatgttgaacaatcacaatc |
210 |
Q |
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| T |
4164759 |
tcacaaaataaagcaatgtgtatagggattttattgtagttttggtggtaattacatttcttaagtttatagtagatatgcatgtagaacaatcacaatc |
4164660 |
T |
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| Q |
211 |
atatacatgtttccaacagagatgta |
236 |
Q |
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| T |
4164659 |
atatacatgtttccagcagagatgta |
4164634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 4177922 - 4177872
Alignment:
| Q |
186 |
atatgcatgttgaacaatcacaatcatatacatgtttccaacagagatgta |
236 |
Q |
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| T |
4177922 |
atatacatgttgaacaatcacaatcatacacatgtttccagcagagatgta |
4177872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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