View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_12 (Length: 409)
Name: NF10271_high_12
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 106 - 391
Target Start/End: Original strand, 33805685 - 33805970
Alignment:
| Q |
106 |
tggttagttctgattatgtagttatttgtattggtgttagactgacttgactgtcctgctttggaagtgtaatttttcatttatcttatcttggcaaatc |
205 |
Q |
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| T |
33805685 |
tggtttgttctgattatgtaattatttgtattggtgttagactgacttgactgtcctgctttggaagtgtaattgttcatttatctaatcttggcaaatc |
33805784 |
T |
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| Q |
206 |
ttgtgcttaggtagagcttttaatatattttgnnnnnnngaaagaaaaatatcaagtgcaaaaagatggtatgagagtagaattttacaaatttgattga |
305 |
Q |
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| T |
33805785 |
ttgtgcttaggtagagcttttaatatattttgtttttttgaaagaaaaatatcaagtgcaaaaagatggtacgagagtagaattttacaaatttgattga |
33805884 |
T |
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| Q |
306 |
aatacaaagaaattgggaacaaaaccccattaagtggctagatcggatcggatcggcatacaaatttatttatgtttatctgattc |
391 |
Q |
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| T |
33805885 |
aatacaaagaaattgggaacaaaaccccattaagtggctagatcggatcggatcggcatacaaatttatttacgtttatctgattc |
33805970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 106 - 391
Target Start/End: Original strand, 33865155 - 33865440
Alignment:
| Q |
106 |
tggttagttctgattatgtagttatttgtattggtgttagactgacttgactgtcctgctttggaagtgtaatttttcatttatcttatcttggcaaatc |
205 |
Q |
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| T |
33865155 |
tggtttgttctgattatgtaattatttgtattggtgttagactgacttgactgtcctgctttggaagtgtaattgttcatttatctaatcttggcaaatc |
33865254 |
T |
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| Q |
206 |
ttgtgcttaggtagagcttttaatatattttgnnnnnnngaaagaaaaatatcaagtgcaaaaagatggtatgagagtagaattttacaaatttgattga |
305 |
Q |
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| T |
33865255 |
ttgtgcttaggtagagcttttaatatattttgtttttttgaaagaaaaatatcaagtgcaaaaagatggtacgagagtagaattttacaaatttgattga |
33865354 |
T |
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| Q |
306 |
aatacaaagaaattgggaacaaaaccccattaagtggctagatcggatcggatcggcatacaaatttatttatgtttatctgattc |
391 |
Q |
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| T |
33865355 |
aatacaaagaaattgggaacaaaaccccattaagtggctagatcggatcggatcggcatacaaatttatttacgtttatctgattc |
33865440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 33805611 - 33805684
Alignment:
| Q |
3 |
agtcttaattttttgttgttacaatggagactaacccaattaccttggagaacaattaactcgcagtcgaattc |
76 |
Q |
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| T |
33805611 |
agtcttaattttttgttgttacaatggagactaacccaattactttggagaataattaactcccagtcgaattc |
33805684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 33865081 - 33865154
Alignment:
| Q |
3 |
agtcttaattttttgttgttacaatggagactaacccaattaccttggagaacaattaactcgcagtcgaattc |
76 |
Q |
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| T |
33865081 |
agtcttaattttttgttgttacaatggagactaacccaattactttggagaataattaactcccagtcgaattc |
33865154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 24226680 - 24226606
Alignment:
| Q |
266 |
aaaagatggtatgagagtagaattttacaaatttgattgaaatacaaagaaattgggaacaaaaccccattaagtggct |
344 |
Q |
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| T |
24226680 |
aaaagatggtgttagagtagaattttgcaaatttaa----aatacaaagaaattgtgaacaaaacctcatttagtggct |
24226606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 23773748 - 23773822
Alignment:
| Q |
266 |
aaaagatggtatgagagtagaattttacaaatttgattgaaatacaaagaaattgggaacaaaaccccattaagtggct |
344 |
Q |
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| T |
23773748 |
aaaagatggtgttagagtagaattttgcaaatttaa----aatacaaagaaattgtgaacaaaacctcatttagtggct |
23773822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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