View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_high_18 (Length: 388)
Name: NF10271_high_18
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 32176666 - 32176379
Alignment:
| Q |
18 |
aaatgcaaagttggtggagattagtggatggggggtg-tggaacaagagttggggttggggtggtgaacttgttgtgaaaggagaagaaattggagatgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
32176666 |
aaatgcaaagttggtggagattagtggatggggggtggtggaacaagagttggggttggggtggtgaacttgttgtgaaagggggtgaaattggagatgc |
32176567 |
T |
|
| Q |
117 |
tataaaagagatgatgaagaatgaattgtttaaagttaaagcaatagagcttaaagaggaaggaaggaaggctataagtgttggtggagattgtgaggtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32176566 |
tataaaagagatgatgaagaatgaattgtttaaagttaaagcaatagagcttaaagaggaaggaaggaaggctataagtgttggtggagattgtgaggtt |
32176467 |
T |
|
| Q |
217 |
accattcagaagctaattcaaaagtggaaaaataatgtcaacaatatttgaggtgttg-tattttttgttcaaaacattgaaagtggg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
32176466 |
accattcagaagctaattcaaaagtggaaaaataatgtcaacaatatttgaggtgttgttattttttgttcaaaacattgagagtggg |
32176379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 32183833 - 32183590
Alignment:
| Q |
18 |
aaatgcaaagttggtggagattagtggatggggggtgtggaacaagagttggggttggggtggtgaacttgttgtgaaaggagaagaaattggagatgct |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32183833 |
aaatgcagggttggttgagattagtggatgggggatttggaacaagaattggggttggggtggtgaacgtgttgtgaaaggagaagaaattggagatgct |
32183734 |
T |
|
| Q |
118 |
ataaaagagatgatgaagaatgaattgtttaaagttaaagcaatagagcttaaagaggaaggaaggaaggctataagtgttggtggagattgtgaggtta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||| || ||||||| ||||||||||||| |
|
|
| T |
32183733 |
ataaaagagatgatgaagaatgaattgtttaaagttaaagcaatagagcttaaagatgggggattgagggctattagcattggtggggattgtgaggtta |
32183634 |
T |
|
| Q |
218 |
ccattcagaagctaattcaaaagtggaaaaataatgtcaacaat |
261 |
Q |
| |
|
| ||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
32183633 |
ctattcagaagcttattcgaaagtggaaaaacaatgtcaacaat |
32183590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University