View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_21 (Length: 344)
Name: NF10271_high_21
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 35479011 - 35479314
Alignment:
| Q |
23 |
acatcagggaaaagttctacttaactcctaaaaacatcaaagataaacaaagcaccacatcgaagaaagctaa----gcaaaccgaacatcaaagataac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35479011 |
acatcagggaaaagttctacttaactcctaaaaacatcaaagataaacaaagcaccacatcgaagaaagctaattaagcaaaccgaacatcaaagataac |
35479110 |
T |
|
| Q |
119 |
aacctcataccatccattaaacaagcatttgatagctaccacatgacagcaaaactataatttatatgaattgtacgagcagataatgctgcattgcgtg |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35479111 |
aacctcataccatccattgaacaagcatttgatagctaccacatgacagcaaaactataatttatatgaattgtacgagcagataatgctgcattgcgtg |
35479210 |
T |
|
| Q |
219 |
cacacgtcttacttcnnnnnnnnnnnntttgcagtactggtggatgaaaccatgtcacccaaaaaatagctaaaaccaaaacaatgtcttccactttata |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35479211 |
cacacgtcttacttcaaaaataaaaaatttgcagtactggtggatgaaaccatgtcacccaaaaaatagctaaaaccaaaacaatgtcttccactttata |
35479310 |
T |
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| Q |
319 |
ttat |
322 |
Q |
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|||| |
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| T |
35479311 |
ttat |
35479314 |
T |
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